Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_014459.1 Length=59798 Score E Sequences producing significant alignments: (Bits) Value seq1923 89.7 2e-13 seq14750 84.2 8e-12 >seq1923 Length=5946 Score = 89.7 bits (98), Expect = 2e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 54408 CAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGAC 54467 ||||| ||||||||||| |||||||| ||||||||||| |||||||| ||| | |||| Sbjct 3764 CAGCTGGGCACGCTGGGTGGCGGCAACCACTTCATCGAACTGTGCCTGGACGAGACCGAC 3823 Query 54468 CGGGTGTGGTTGTTCCTGCACTCCGGTTCTCGTGGTGTCGGTAACAAGATCG 54519 ||||||| || | |||||| ||| || || || ||| ||| ||||| Sbjct 3824 ACGGTGTGGGTGATGCTGCACAGCGGATCGCGCGGCACCGGCAACCTGATCG 3875 >seq14750 Length=960 Score = 84.2 bits (92), Expect = 8e-12 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 54409 AGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGACC 54468 || |||||||||| ||||||||||| |||||||||||||| ||||||||| | ||| Sbjct 1 AGATCGGCACGCTCGGCGGCGGCAACCACTTCATCGAGCTCTGCCTCGACGAAAGCGATG 60 Query 54469 GGGTGTGGTTGTTCCTGCACTCCGGTTCTCGTGGTGTCGGTAACAAGATCG 54519 || ||| || | |||||| ||| || || ||| ||| ||| ||||| Sbjct 61 CCGTCTGGGTGATGCTGCACAGCGGCTCGCGCGGTACCGGCAACCTGATCG 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191151295195680