Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_014467.1 Length=176788 Score E Sequences producing significant alignments: (Bits) Value seq29522 93.3 5e-14 seq16087 89.7 6e-13 >seq29522 Length=371 Score = 93.3 bits (102), Expect = 5e-14 Identities = 70/81 (86%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 49780 CGGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGGTTCGA 49839 |||||| |||||| | | ||||||||| || ||||||||||||| ||| |||||||| | Sbjct 201 CGGCCCCTTAGCTCAGT-GGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAA 259 Query 49840 ATCCAGCAGGGGCCACCAAAT 49860 |||||||||||||||||||| Sbjct 260 GTCCAGCAGGGGCCACCAAAT 280 >seq16087 Length=871 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 51304 GTGGAAGGTGGACAACACTTAAACGTAAACGTGTTGCGCCGCGAAACTCTGGAAGATGCT 51363 || |||||||| || ||| | ||||| |||||| |||| |||||||| ||| || || Sbjct 104 GTTGAAGGTGGTCAGCACCTGAACGTTAACGTGCTGCGTCGCGAAACGCTGATGGACGCC 45 Query 51364 GTGAAGCATCCAGAAAAATACCCACAGTTAACGATCCGTGTGTC 51407 || |||| || ||||||||||||||| | || || |||||||| Sbjct 44 GTTGAGCACCCTGAAAAATACCCACAGCTGACCATTCGTGTGTC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565342342113120