Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_014661.1 Length=164093 Score E Sequences producing significant alignments: (Bits) Value seq495 82.4 8e-11 >seq495 Length=15372 Score = 82.4 bits (90), Expect = 8e-11 Identities = 125/175 (71%), Gaps = 5/175 (3%) Strand=Plus/Plus Query 3030 TATGAGATTCAAGAAGCAATGGATGATCTGGA-AACATCTCCCAAAGCTTGACTAACATT 3088 |||||| ||| | | || ||||| | ||| ||| | ||| |||||| || | ||| Sbjct 10669 TATGAGTTTCGACCAATAAAGGATGGTTGGGATAACGTTTCC-AAAGCTCAACCAGAATT 10727 Query 3089 GCCTTATTTGACAATAACATTTTCCATGCAGGTTCCATCCAGCGTGTAGGAGCGTCGATG 3148 || |||||||| | || ||||||||| |||||| |||||| ||| | | || ||| Sbjct 10728 GCTTTATTTGAAAGTAGCATTTTCCAACAAGGTTCAATCCAGTTTGTTTGTGGGTGGAT- 10786 Query 3149 ATATTTTTACCGAACTCTTCTTCAGTGATCCATTCCCATGGATACAATTTGAACA 3203 || || | || ||||||| |||||||||||||||||| | ||||||| Sbjct 10787 --ATATTGAGAAAATGCTTCTTCCCAGATCCATTCCCATGGATAGAGCTTGAACA 10839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524736388817320