Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq451 183 4e-41 seq195 134 2e-26 seq9529 127 3e-24 seq35289 109 7e-19 seq902 98.7 1e-15 seq7645 82.4 9e-11 >seq451 Length=16219 Score = 183 bits (202), Expect = 4e-41 Identities = 1065/1680 (63%), Gaps = 48/1680 (3%) Strand=Plus/Minus Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 ||| ||||| ||||| |||||| | | || | ||| || || || || | || Sbjct 9289 TTTAGAGACGTACGAATTGATGTCTCAAAAGTTCTTTACCCATGCGACGCCCACGTTGTT 9230 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 || ||||| || ||| | || ||| | || ||||| | |||| | | || || Sbjct 9229 TAATGCTGGCACTCCACGGCCGCAATTATCTTCGTGTTTTTTACTTGCCATGCAAGATGA 9170 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 |||||| | || || || | || | | ||||||| |||||||||||||| || Sbjct 9169 TTCAATTGAAGGAATCTATGATACATTGAAGCAATGTGCTTGTATCTCAAAGTGGGCGGG 9110 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910 ||||| ||||| ||| || || || |||| | || || | ||||| || Sbjct 9109 AGGTATTGGGATCAGCATGCACAATATCCGAGCTACGAACAGCTACATCCGTGGTACTAA 9050 Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 || || | ||||| || || ||| | ||||| ||||||| ||| || || ||||| Sbjct 9049 CGGGTCTTCCAACGGTATCATCCCCATGTTGCGCGTGTTTAACGACACGGCTCGGTATGT 8990 Query 111971 AAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 112027 |||||| ||| || ||||| || || | ||| |||| | || |||||||| || Sbjct 8989 GGACCAAGGTGGAGGTAAACGCAAAGGTTCCTTTGCAATCTACTTGGAACCATGGCATGC 8930 Query 112028 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC-C 112086 || | | |||||||| || | || || || || ||| || | | || | Sbjct 8929 AGACGTGTTTGAGTTCCTCGATCTCCGAAAAAATCACGGCAGTGA-ACTGCACCGAGCGC 8871 Query 112087 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 112146 | || | || | |||||| ||||| | ||||| |||||||| |||| || | || Sbjct 8870 GTGACTTGTTTTACGCTCTATGGATATCTGATCTGTTCATGAAACGAGTGGAAAGTAATG 8811 Query 112147 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAG 112205 |||| ||| | | ||||||||| || | || || ||||||| ||| ||| | ||| || Sbjct 8810 GCAAGTGGAGTTTGTTTTGTCCAAACGAAGCTCCTGGTCTCTACGAGTGCTG-GGGAGAT 8752 Query 112206 GAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCA 112265 || ||||| |||||||| || ||| ||| | || | || || |||| | | | Sbjct 8751 GAATTTGAGACCCTCTACGAAACGTATGAGAAGGAGGGACGTGCTCGCAAGACGAT-CAA 8693 Query 112266 GCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATAT 112324 || | | ||||| || || | | | || | ||||| || || | ||| Sbjct 8692 TGCGCAGCAGTTGTGGTTTGCCATCTTGGACGCACAGATTGAGACGGGGGTGCCCTTTAT 8633 Query 112325 GCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAG 112384 ||||||||| ||||| || | ||| ||||| ||||| | || |||| | Sbjct 8632 GCTTTACAAGGACGCGGCCAATCGTAAGTCCAATCAGCAGAATCTTGGCACGATC---CG 8576 Query 112385 TTCC---AACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 112441 ||| ||| | || || | |||| | || || ||| || ||||| Sbjct 8575 ATCCAGTAACTTGTGCTGTGAGGTGATGGAGTACACGTCTCCGGACGAGGTTGCGGTGTG 8516 Query 112442 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTA 112501 ||| | || ||| | || || ||||||| |||||| |||| | || | || Sbjct 8515 CAACTTGGCGTCAGTGGCGCTGCCCAAGTTTGTGGA-----AGACGGTG-TGTTCAACTA 8462 Query 112502 TGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAG 112561 || || |||| || || || ||||| ||||| |||| ||| ||||| Sbjct 8461 CAAATTGCTGTACGACGTGACCAAGGTCGTCACCCGCAACCTCAACAAAGTCATTGACGT 8402 Query 112562 AAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTC 112620 || | ||||| |||| ||| ||||| ||||| || ||| | || ||||| | || Sbjct 8401 CAACTACTACCCGGTTGCAGA-AGCTCGAAAATCCAACATGCGCCATCGTCCCGTGGGAA 8343 Query 112621 TCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACG 112680 | ||||| |||||||| || |||| || |||| | || ||||| || | Sbjct 8342 TTGGTGTTCAAGGTCTGGCCGATGCTTTTCTTCTCATGAACTTTGCGTTTGAAAGTGAAG 8283 Query 112681 AAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGA 112740 | || ||| | || | || |||||||| || || |||| | | ||| | Sbjct 8282 AGGCTCGTGAACTGAACAAGAACATCTTTGAGACCATCTACTACGCTTCGATGGAGACTT 8223 Query 112741 GTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCA- 112799 | |||| | || ||| ||||| || || || || |||| || || || || Sbjct 8222 CTATGGAGATTGCCAAGGAACTGGGTCCGTACGAGACGTTCCAGGGCTCCCCTGC--CAG 8165 Query 112800 CAAGGGGTGCTT-CAATTTGATATGTGGGAAGGTGAGACCAAG----CT--TCACTACGA 112852 ||||||| ||| |||||||| |||||| |||| || | || || | || Sbjct 8164 CAAGGGGATCTTCCAATTTGACATGTGG---GGTGTCACTCCGTCGTCTGGTCTTTGGGA 8108 Query 112853 CTGGGACGCTCTCAAG--GAACG-CATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TG 112907 |||| ||| | ||| ||| | |||| || | ||| |||||||| ||||| | Sbjct 8107 CTGGACCGCCTTGAAGGAGAATGTGATCA---AGCACGGTATTCGTAAC--TCTTTGCTA 8053 Query 112908 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 112967 |||| || |||||||| || || || || || ||| |||| || ||||||| | | || Sbjct 8052 GTGGCTCCTATGCCAACTGCTTCAACTGCCCAGATCCTGGGCAACAATGAATCCATCGAG 7993 Query 112968 CCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAAC 113027 || ||||| | ||||| || | | ||||| || |||||| ||| |||||| Sbjct 7992 CCGTACACATCAAACATGTACAATCGTCGCGTACTCGCTGGTGAGTTTACGATCGTCAAC 7933 Query 113028 AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTC 113087 |||||||| || | || || | || | || ||||| | || | ||| Sbjct 7932 AAGCATCTGATGAAGGAGCTGATTGATTTGGGCATCTGGACGCCTGAAGTCCGTAATCAA 7873 Query 113088 ATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAG 113147 || |||| | ||||| || | ||||| | | |||||||| | || ||| | Sbjct 7872 ATCTTGAACGACGGTGGATCGGTGCAAAAGGTCAAGACCATTCCAGACCATATCAAGGAA 7813 Query 113148 TTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCCGCAGATCGT 113207 |||| || || |||||||||||| ||| ||| | |||||| | || |||||| Sbjct 7812 AAGTACAAGACCGTGTGGGAAATCAAGCAAAAGTCGGTCTTGGACATGTCGGCTGATCGT 7753 Query 113208 GGTCGCTT-CATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTC 113266 || ||||| |||| || |||||| | ||| | ||| | ||| ||||| Sbjct 7752 GG-CGCTTACATTTGCCAGAGTCAATCGCTCAATATTCACATTGCCGATCCGACGATCAG 7694 Query 113267 CAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTA 113326 || ||| | |||||||| | || ||||| ||||| ||||| ||||| ||||| || Sbjct 7693 TAAACTCACATCTATGCATTTCTATGCATGGAAAAAGGGCCTCAAGACGGGCATGTACTA 7634 >seq195 Length=24554 Score = 134 bits (148), Expect = 2e-26 Identities = 192/268 (72%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 102047 ACTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCA 102106 |||||| |||| ||| || ||||| | || |||||| | | | | ||||| | Sbjct 23004 ACTCATTGACACGTACATCAAGGACGCTGTAGAGAAGGACCTTTTGCTGCGTGCCATTGA 23063 Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAA-GT 102165 || | || ||| | | |||||||| | |||||| | ||||||| ||| | || Sbjct 23064 CACTATCCCGTGTGTGAAGAAGAAAGCCGCTTGGGCACTCAAGTGGTGTGACCCGCGTGT 23123 Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 ||| | | || ||||| || | || || || | || ||||||||||||||||||| Sbjct 23124 GTCGT-CATACGCAGAGCGTCTTCTTGCGTTCGCCTCAGTGGAGGGTATCTTCTTCTCTG 23182 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 | ||||||||| | || | ||||| ||||| || ||||||||||| |||||| |||| | Sbjct 23183 GCTCCTTCTGCTCCATCTTCTGGCTGAAGAAACGTGGTCTCATGCCTGGTCTCAGCTTTT 23242 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGG 102313 | || ||||||||| |||||| ||||| Sbjct 23243 CGAATGAGCTTATCAGTCGTGATGAGGG 23270 >seq9529 Length=1512 Score = 127 bits (140), Expect = 3e-24 Identities = 256/370 (69%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 |||||||| || || ||||| | | || ||||||| |||||| | | || ||||| Sbjct 430 CGATCAAAACGCCCCGGGCGCAACAAAGCAGCATCAAGTATATCAGCCCTGTTGGTTGCA 371 Query 15945 GCGATGACAACAATACCTGT-TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003 || || |||| ||||| || ||| | ||||| |||||||| || || | |||||| || Sbjct 370 GCAATCACAATGATACCAGTGTTCCCT-TCAAAGCCATCCATTTCGGTAAGAAGCTGATT 312 Query 16004 AATAGTTTGTTCCCGTTCATCATTCGCTGG-CATACCACCAGCACTGCGTTGCTTTCCCA 16062 || |||||||| || |||||||| || | || |||| | | ||| | || | Sbjct 311 AAGGGTTTGTTCTCGCTCATCATTTCCTCCACCTATT-CCAGTTCCTCTCTGCCTACCAA 253 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGA 16122 | |||||||| ||||| | ||| || ||||| || |||||| || || || | Sbjct 252 CTGCATCAATTTCATCCACGAAAACAATGCAAGGGGCATTTTCCTTGGCCTTTTTGAACA 193 Query 16123 GATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 16180 | || || ||| || | || || | ||||||||||||||| ||||| | | | | Sbjct 192 GGTCACG--CACTCTAGATGCTCCAATACCAACAAACATCTCAACAAACTCAGAACCTG- 136 Query 16181 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239 | || | || ||| || ||| || ||| || |||||||| ||| || | |||||| | Sbjct 135 AGATAGAGAAGAAAGGTACACCAGCTTCCCCTGCAATGGCCTTGGCTAGCAAAGTCTTCC 76 Query 16240 CCGTACCTGG 16249 | || ||||| Sbjct 75 CAGTCCCTGG 66 >seq35289 Length=16108 Score = 109 bits (120), Expect = 7e-19 Identities = 255/378 (67%), Gaps = 24/378 (6%) Strand=Plus/Plus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 ||| ||||| ||||| || || | | || | |||||| | |||||| || || ||||| Sbjct 2720 ACGGTCAAAACGACCCGGACGCAATAATGCTTTATCAAGCACATCAACACGGTTAGTTGC 2779 Query 15944 GGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGC-- 15998 || || |||| | ||| || ||| |||||||| ||||||||| | |||| Sbjct 2780 AGCAATAACAATGACGCCT---TCATTACCTTCAAAACCGTCCATCTCT---ACAAGCAT 2833 Query 15999 -TGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC--ACCAGCACTGCGTTGC 16055 ||||| | |||||||| || ||||||| | | | | ||| | || ||| || Sbjct 2834 TTGGTTTAAGGTTTGTTCACGCTCATCATGACCA--CCTCCTGTACCTGAACCGCGGTGA 2891 Query 16056 TTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG---TTGA-TTTTCGCGAGC 16111 ||||| ||||||||||||||||| |||| ||| ||||| ||| ||||| || Sbjct 2892 CGACCCACTGCATCAATCTCATCAATAAAGATGATACATGGCGCGTGACGCTTCGCTTGC 2951 Query 16112 GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTT 16171 ||||| | || || ||||| || |||||||| || ||||| || ||||||| Sbjct 2952 ----TCAAACATGTCACGGACACGGGACGCACCCACACCCACGAACATTTCTACAAAGTC 3007 Query 16172 TGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 16231 | | ||| || ||| || || || | |||||| ||||| ||| || | | Sbjct 3008 AGAACCTGAAATGCTGAAGAAAGGAACCTTCGCTTCACCAGCAATTGCTTTAGCTAATAA 3067 Query 16232 AGTCTTACCCGTACCTGG 16249 || ||||| ||||| || Sbjct 3068 CGTTTTACCAGTACCCGG 3085 >seq902 Length=10209 Score = 98.7 bits (108), Expect = 1e-15 Identities = 136/187 (73%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG--CGACTTCAAAGA 16122 || |||||||| |||||||||| ||||||||| | ||| ||| | ||||| |||| | Sbjct 1784 GCGTCAATCTCGTCAATGAAGATGATGCATGGC-GCTTTCCGCTTGGCCGACT-CAAACA 1727 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 16182 | || | || || || || ||||| || |||||||| |||| | | | ||| Sbjct 1726 GGTCTCTCACGCGACGCGCACCTACACCCACGTACATCTCCTCAAACTCGGATCCAGAAG 1667 Query 16183 ATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 16242 | | || ||| || ||| || || |||||||||||||| || || || |||||||||| Sbjct 1666 AGTAGAAGAATGGCACACCAGCCTCTCCCGCAATGGCTCGAGCCAGCAGTGTCTTACCCG 1607 Query 16243 TACCTGG 16249 |||| || Sbjct 1606 TACCGGG 1600 >seq7645 Length=1876 Score = 82.4 bits (90), Expect = 9e-11 Identities = 244/372 (66%), Gaps = 16/372 (4%) Strand=Plus/Plus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| || || || || | ||||| ||| || | ||| |||||||| || || Sbjct 954 ATCAAACCGGCCCGGCCGCAACAGCGCTGAATCCAGAACATCCGGCCGATTCGTCGCCGC 1013 Query 15947 GATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 | |||| || || |||| | | || || |||||||| ||||| ||||| || Sbjct 1014 AAGAACAATAACCCCGCTGTTCCCAGAG--AACCCGTCCATCTCCGTCAACAGCTGATTG 1071 Query 16005 ATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 16062 || || || |||| ||||||||| ||| || || |||| | | |||| | || | Sbjct 1072 ATTGTCTGCTCCCTTTCATCATTACCGCCACCAAGCC--CAGCCCCCCTTTGCCTCCCTA 1129 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTTCA 16118 | || ||||| ||||| || ||||||||||| || ||| || || | || Sbjct 1130 CCGCGTCAATTTCATCGATAAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----TCG 1185 Query 16119 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 16178 || || |||||||| || || || ||||| || || | ||| || || | | || Sbjct 1186 AACAGGTCCCGTACCCGGGACGCACCTACACCGACGAAGAGCTCGACGAACTCCGACGCC 1245 Query 16179 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 16238 | || | ||||||||| | || || | | || ||||| || |||||||| Sbjct 1246 GCGCAGGAAAAGAAGGGGACCCCGGCCTCCCCTGAGACAGCCCGGGCCAGCAGAGTCTTG 1305 Query 16239 CCCGTACCTGGC 16250 ||||| || ||| Sbjct 1306 CCCGTCCCCGGC 1317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620466642948080