Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_015250.1 Length=159801 Score E Sequences producing significant alignments: (Bits) Value seq15025 105 7e-18 seq34590 96.9 4e-15 seq31058 82.4 8e-11 >seq15025 Length=942 Score = 105 bits (116), Expect = 7e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 69740 TGGTGGGCCCAGCAGGACTCGAACCTGAAACCAACGGATTATGAGTCCGCTGCTCTGCCA 69799 ||||||||||| ||||||||||||||| |||||| ||||||||||||| ||||||| | Sbjct 105 TGGTGGGCCCACCAGGACTCGAACCTGGAACCAAAGGATTATGAGTCCTCTGCTCTAACC 46 Query 69800 ATTGAGCTATAGGCCC 69815 |||||||||||||||| Sbjct 45 ATTGAGCTATAGGCCC 30 >seq34590 Length=233 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 69740 TGGTGGGCCCAGCAGGACTCGAACCTGAAACCAACGGATTATGAGTCCGCTGCTCTGCCA 69799 ||||||||||| ||||| ||||||||| |||||| ||||||||||||| ||||||| | Sbjct 233 TGGTGGGCCCACCAGGATTCGAACCTGGAACCAAGGGATTATGAGTCCCCTGCTCTAACC 174 Query 69800 ATTGAGCTATAGGCCC 69815 ||||||||||||||| Sbjct 173 GTTGAGCTATAGGCCC 158 >seq31058 Length=331 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 69740 TGGTGGGCCCAGCAGGACTCGAACCTGAAACCAACGGATTATGAGTCCGCTGCTCT-GCC 69798 ||||||||||| ||||||||||| ||||| ||||||||||||| ||||||| || Sbjct 250 TGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAACC 191 Query 69799 AATTGAGCTATAGGCCC 69815 || |||||||||||||| Sbjct 190 AACTGAGCTATAGGCCC 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511008090152840