Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq4132 116 5e-21 seq14841 93.3 5e-14 seq10753 86.0 8e-12 seq7046 86.0 8e-12 >seq4132 Length=3213 Score = 116 bits (128), Expect = 5e-21 Identities = 242/359 (67%), Gaps = 5/359 (1%) Strand=Plus/Minus Query 145193 GCATACCCCGCAGCACCAGACTCCGAATACGGGTGGGAAAAACTCTTCAGCGAGCGGTTG 145252 ||||| || ||| || || || |||||||| ||||||||| | || || || || Sbjct 1592 GCATATCCGGCAAATCCTGATTCAGAATACGGTTGGGAAAAATTGTTTTCTGAACGATTA 1533 Query 145253 TATCTCGCTTATAATCGGAATCACGGCATTCCTGTTAGGATTGCTCGCTACCACAATATC 145312 | | | |||| ||| | || || || |||| | ||||| | | || ||||| Sbjct 1532 TTTTTAGCTTTTAACAGAAACTACAATCTTGATGTTCGTATTGCAAGATTTCATAATATT 1473 Query 145313 TTCGGACCAGAAGGAACCTGGGAAGGTGGAAGAGAAAAAGCACCAGCTGCAATCTGCCGC 145372 || || || |||| |||||| |||| || | |||||||| || |||||||| ||| | Sbjct 1472 TTTGGTCCGCAAGGCACCTGGAAAGGCGGTAAGGAAAAAGCCCCGGCTGCAATGTGCAGA 1413 Query 145373 AAAGTCGCTTAC-CTCCCAACAGAGGGTGGTGCTATTGAAGTGTGGGGTGATGGAGAACA 145431 || | ||| | |||| || ||| || |||||||| ||||| || ||| ||| Sbjct 1412 AAGGCTGCTGAAGCTCCG----GAAGGTTCTGAAATTGAAGTATGGGGAGACGGACTACA 1357 Query 145432 GACAAGATCCTTCCTGTATATCGATGAATGCATTGAAGCAACCAGGAGACTGATGGACAG 145491 || | ||||| | ||| | ||||| || | ||||| | || | ||| | Sbjct 1356 AACGCGTTCCTTTTTATATGTAGATGAGTGTGTCGAAGCCGTAATCCGATTAATGAAATC 1297 Query 145492 TGACTTTATGGGTCCTGTGAACATTGGTTCTGAAGAGATGGTTACCATCAACGAATTGG 145550 || ||| |||| || || || |||||||||||||| ||||| | || || ||||||| Sbjct 1296 CGATTTTCTGGGACCGGTAAATATTGGTTCTGAAGAAATGGTGTCTATAAATGAATTGG 1238 >seq14841 Length=953 Score = 93.3 bits (102), Expect = 5e-14 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 140961 TAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTAGGTTCGAGTCCTACC 141020 ||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||| | Sbjct 30 TAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCGAGTCCTGCA 89 Query 141021 TGGGTCGCC 141029 |||||||| Sbjct 90 GGGGTCGCC 98 >seq10753 Length=1336 Score = 86.0 bits (94), Expect = 8e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 141678 GGAAGAGTGGTCGAGTGGTTTATGGCACTGGTCTTGAAAACCAGCGAGGGTGCAAGTTCT 141737 ||||| |||| ||| |||||| |||| ||||||||||||| |||||||| ||| || Sbjct 587 GGAAGCGTGGCAGAGCGGTTTAATGCACCGGTCTTGAAAACCGACGAGGGTGTGAGTCCT 646 Query 141738 CCGTGGGTTCAAATCCCACCTCTTCCG 141764 ||||| |||| |||| |||| |||||| Sbjct 647 CCGTGAGTTCGAATCTCACCGCTTCCG 673 >seq7046 Length=2020 Score = 86.0 bits (94), Expect = 8e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 141678 GGAAGAGTGGTCGAGTGGTTTATGGCACTGGTCTTGAAAACCAGCGAGGGTGCAAGTTCT 141737 ||||| |||| ||| |||||| |||| ||||||||||||| |||||||| ||| || Sbjct 673 GGAAGCGTGGCAGAGCGGTTTAATGCACCGGTCTTGAAAACCGACGAGGGTGTGAGTCCT 732 Query 141738 CCGTGGGTTCAAATCCCACCTCTTCCG 141764 ||||| |||| |||| |||| |||||| Sbjct 733 CCGTGAGTTCGAATCTCACCGCTTCCG 759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610125638851560