Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq7396 199 5e-46 seq10067 129 7e-25 seq3491 89.7 6e-13 >seq7396 Length=1930 Score = 199 bits (220), Expect = 5e-46 Identities = 460/676 (68%), Gaps = 24/676 (4%) Strand=Plus/Minus Query 154441 GTATGGTTCCACTTGGCAGTTGCACAATGAAATTAAATGCAGCAGCAGAACTAATGCCTG 154500 ||||| ||||| | || ||||| |||||||| |||||| | | || | ||||||| Sbjct 1600 GTATGATTCCATTAGGATCCTGCACTATGAAATTGAATGCAACTGTGGAGATGATGCCTG 1541 Query 154501 TGTCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCT-ATGATACAGACCATGGGT 154559 | | ||| | ||| || || |||| || | ||||| | ||| || ||| | Sbjct 1540 TTACTTGGCCAAGTTTTTCTGACATGCACCCTTTTGCACCTCAAGATCAAGCTGCTGG-T 1482 Query 154560 TATCAGAAAATTATAGATGACTTACAGAAATGGT-TATGTGATATCACAGGGTTTGATTC 154618 |||||| | || | | || || || | | | | ||||| || || ||||||||||| Sbjct 1481 TATCAGGAGATGTTCAAAGATTTGG-GAGAGGTTCTTTGTGACATTACTGGGTTTGATTC 1423 Query 154619 TATATCATTACAACCTAACGCAGGATCA-CAGGGTGAGTATGCAGGACTGTTAGCAATCC 154677 | || | ||||| || || || || ||||| |||||||| |||||| | | || | Sbjct 1422 GTTCTCTCTGCAACCAAATGCTGGTGCAGCAGGG-GAGTATGCTGGACTGATGGTTATAC 1364 Query 154678 AAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAG 154737 || || ||||||| | |||||| | | || ||||| ||| | || || | || | Sbjct 1363 GTGCTTATCATCAAGCAAGAGGAGAGGGGCACAGGAATGTCTGTATTATTCCTGTATCTG 1304 Query 154738 CACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGT---CA 154794 | |||||||| |||||||| ||||||| ||| || |||||| |||| ||| || Sbjct 1303 CTCATGGAACGAATCCTGCAAGTGCTGCTATGTGTGGCATGAAAATTGTTTCTGTTGGCA 1244 Query 154795 AGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGA-AT 154853 | |||| | | || || || ||||| | || ||| |||||||| || ||| || Sbjct 1243 CG---GATGCTAAAGGAAATATTAACATCGAGGAACTA---AAGAAAGCT-TC-TGAGAT 1192 Query 154854 ACATTTGAA----CTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGA 154909 || | | || ||| ||||| | || || || || || |||||||| | ||| Sbjct 1191 GCACAAGGAAAACCTTTCAGCACTTATGGTGACCTATCCTTCAACCCATGGTGTGTATGA 1132 Query 154910 AACTAACATTAGACAG-ATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTG 154968 ||| || | ||||| |||||| | ||||| ||||| || ||||| || | | Sbjct 1131 GGAGGGTATT-GATACCATATGCAAGATCATCCATGAAAATGGGGGCCAGGTTTACATGG 1073 Query 154969 ATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATG 155028 |||| ||||| | ||||||||||| || || ||| ||| || | ||| || |||| Sbjct 1072 ATGGGGCAAACATGAATGCACAGGTGGGGCTGACAAGTCCAGGTTATATTGGAGCTGATG 1013 Query 155029 TATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCG 155088 | ||||| || || | ||||| || ||||| ||||||||||||||||| || ||||| Sbjct 1012 TTTGTCACCTTAATCTTCATAAGACTTTCTGCATTCCACATGGAGGTGGCGGACCTGGTA 953 Query 155089 TAGGTCCTATAGGTGT 155104 | || || || || || Sbjct 952 TGGGGCCGATTGGAGT 937 Score = 102 bits (112), Expect = 9e-17 Identities = 79/94 (84%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 155362 CAGAAGATATAGCAAAGAGACTTATGGACTATGGATTCCATGCACCTACACTATCGTGGC 155421 |||||||| | || ||||||||||| ||||||||||||||||||||||| | || |||| Sbjct 607 CAGAAGATGTTGCTAAGAGACTTATAGACTATGGATTCCATGCACCTACCATGTCCTGGC 548 Query 155422 CTGTGTTAGGAACTATGATGGTAGAACCCACAGA 155455 | ||| ||| ||| ||||| | ||||||||||| Sbjct 547 CGGTGCCAGGCACTTTGATGATTGAACCCACAGA 514 >seq10067 Length=1425 Score = 129 bits (142), Expect = 7e-25 Identities = 185/259 (71%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 || |||||||| |||| |||||||||||||| |||||||| || || | || || | Sbjct 371 CAGAGGTTTGGGGTTCCGATGGGATATGGAGGGCCTCATGCAGCTTTTCTGGCTACTTCC 312 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAG 153885 | |||||||||||| || ||||| || ||| ||| || ||| |||||| | | Sbjct 311 CAAGAGTATAAGAGAATCATGCCTGGTAGGATTATAGGAGTGAGT--GTAGATTCAAATG 254 Query 153886 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAG 153945 | || || ||| | || | |||||| | ||||| ||||| || |||| || | Sbjct 253 GCAAGCCTGCTCTTAGAATGGCGATGCAGACTCGGGAGCAACATATTCGGCGAGATAAGG 194 Query 153946 CAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAG 154005 | ||||| || |||||||| || ||||| |||| || || ||||||| | || |||| Sbjct 193 CCACCAGCAATATCTGCACGGCACAGGCCTTGCTAGCAAACATGTCTGCGATGTACGCAG 134 Query 154006 CATATCATGGTGCAGATGG 154024 ||||||||| |||| || Sbjct 133 TCTATCATGGTCCAGAAGG 115 >seq3491 Length=3714 Score = 89.7 bits (98), Expect = 6e-13 Identities = 169/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 154863 CTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGA 154922 ||| ||||| | ||| | || || ||||| || || || || | |||| || |||| Sbjct 956 CTGGCATGTTTGATGGTGACCTATCCATCAACCCACGGAGTTTATGAAGCTTCTATTATT 897 Query 154923 CAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTA 154982 | || || || | || || || || || ||||| || | || || || ||| | Sbjct 896 GAAGTAACAAAAATTATACACGAAAACGGCGGACAGGTTTACATGGACGGTGCCAATATG 837 Query 154983 AATGCACAGGTAGGACTAGCAAAACCATGTGAGTAT-GGTGCAGATGTATGTCATCTAAA 155041 ||||||||||||||| | |||| || | | || || || || || || || || || Sbjct 836 AATGCACAGGTAGGATTGACAAATCC-GGCTACAATCGGAGCGGACGTTTGCCACCTGAA 778 Query 155042 CTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGG 155101 | | |||||||| || |||||| || ||||| ||||| ||||| ||||| || || | Sbjct 777 CCTGCATAAAACCTTTGCTATTCCTCACGGAGGCGGAGGACCTGGGGTAGGACCAATTTG 718 Query 155102 TGTAGC 155107 ||| || Sbjct 717 TGTTGC 712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578955491953760