Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq7396 179 4e-40 seq10067 123 3e-23 seq3491 95.1 1e-14 >seq7396 Length=1930 Score = 179 bits (198), Expect = 4e-40 Identities = 358/519 (69%), Gaps = 20/519 (4%) Strand=Plus/Minus Query 159271 TGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCA-CAGGGTGA 159329 ||||| || || ||||||||||| | || | ||||| || || || || ||||| || Sbjct 1445 TGTGACATTACTGGGTTTGATTCGTTCTCTCTGCAACCAAATGCTGGTGCAGCAGGG-GA 1387 Query 159330 GTATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAA 159389 |||||| |||||| | | || | || || ||||||| | |||||| | | || || Sbjct 1386 GTATGCTGGACTGATGGTTATACGTGCTTATCATCAAGCAAGAGGAGAGGGGCACAGGAA 1327 Query 159390 TGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGG 159449 ||| ||| | || || | || || |||||||| ||||||||| || | ||| || Sbjct 1326 TGTCTGTATTATTCCTGTATCTGCTCATGGAACGAATCCTGCAAGTGCTGCTATGTGTGG 1267 Query 159450 GATGAAAGTTGTAGGTGT---CAAGTGTGATGATGATGGCAACATAGACATCAAAGATCT 159506 |||||| |||| ||| || | |||| | | || || || ||||| | || || Sbjct 1266 CATGAAAATTGTTTCTGTTGGCACG---GATGCTAAAGGAAATATTAACATCGAGGAACT 1210 Query 159507 AGAGAAGAAAGCAATCATGA-ATACATTTGAA----CTGTCATGTATTATGATTACATAT 159561 | |||||||| || ||| || || | | || ||| ||||| | || ||| Sbjct 1209 A---AAGAAAGCT-TC-TGAGATGCACAAGGAAAACCTTTCAGCACTTATGGTGACCTAT 1155 Query 159562 CCATCTACACATGGTGTATTTGAAACAAACATCAGACAG-ATATGTAAGATTGTTCATGA 159620 || || || |||||||| | ||| || || | ||||| ||||| | ||||| Sbjct 1154 CCTTCAACCCATGGTGTGTATGAGGAGGGTATT-GATACCATATGCAAGATCATCCATGA 1096 Query 159621 GAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAA 159680 ||||| || ||||| || | ||||| ||||| | ||||||||||| || || ||| Sbjct 1095 AAATGGGGGCCAGGTTTACATGGATGGGGCAAACATGAATGCACAGGTGGGGCTGACAAG 1036 Query 159681 ACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCC 159740 ||| || | ||| || ||||| ||||| || || | |||||||| ||||| ||||| Sbjct 1035 TCCAGGTTATATTGGAGCTGATGTTTGTCACCTTAATCTTCATAAGACTTTCTGCATTCC 976 Query 159741 ACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||||||||| || ||||| | || || ||||| || Sbjct 975 ACATGGAGGTGGCGGACCTGGTATGGGGCCGATTGGAGT 937 Score = 98.7 bits (108), Expect = 1e-15 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 160037 CAGAAGATATAGCAAAGAGACTTATGGACTATGGATTCCATGCACCTACACTATCGTGGC 160096 |||||||| | || ||||||||||| ||||||||||||||||||||||| | || |||| Sbjct 607 CAGAAGATGTTGCTAAGAGACTTATAGACTATGGATTCCATGCACCTACCATGTCCTGGC 548 Query 160097 CTGTGTTAGGAACTATGATGGTAGAACCAACAGA 160130 | ||| ||| ||| ||||| | ||||| ||||| Sbjct 547 CGGTGCCAGGCACTTTGATGATTGAACCCACAGA 514 >seq10067 Length=1425 Score = 123 bits (136), Expect = 3e-23 Identities = 184/259 (71%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 || |||||||| |||| |||||||| ||||| |||||||| || || | || || | Sbjct 371 CAGAGGTTTGGGGTTCCGATGGGATATGGAGGGCCTCATGCAGCTTTTCTGGCTACTTCC 312 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560 | |||||||||||| || ||||| || ||| ||| || ||| |||||| | | Sbjct 311 CAAGAGTATAAGAGAATCATGCCTGGTAGGATTATAGGAGTGAGT--GTAGATTCAAATG 254 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || || ||| | || | |||||| | ||||| ||||| | |||| || | Sbjct 253 GCAAGCCTGCTCTTAGAATGGCGATGCAGACTCGGGAGCAACATATTCGGCGAGATAAGG 194 Query 158621 CAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAG 158680 | ||||| || |||||||| ||||| || |||| || || ||||||| | | || |||| Sbjct 193 CCACCAGCAATATCTGCACGGCACAGGCCTTGCTAGCAAACATGTCTGCGATGTACGCAG 134 Query 158681 CATATCATGGTGCAGATGG 158699 ||||||||| |||| || Sbjct 133 TCTATCATGGTCCAGAAGG 115 >seq3491 Length=3714 Score = 95.1 bits (104), Expect = 1e-14 Identities = 170/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 159538 CTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGA 159597 ||| ||||| | ||| | || |||||||| || || || || | |||| | || | Sbjct 956 CTGGCATGTTTGATGGTGACCTATCCATCAACCCACGGAGTTTATGAAGCTTCTATTATT 897 Query 159598 CAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTA 159657 | || || ||| | || || || || || ||||| || | || ||||| ||| | Sbjct 896 GAAGTAACAAAAATTATACACGAAAACGGCGGACAGGTTTACATGGACGGTGCCAATATG 837 Query 159658 AATGCACAGGTAGGTCTAGCAAAACCATGTGACTAT-GGTGCAGATGTATGTCATCTAAA 159716 |||||||||||||| | |||| || | || || || || || || || || || || Sbjct 836 AATGCACAGGTAGGATTGACAAATCC-GGCTACAATCGGAGCGGACGTTTGCCACCTGAA 778 Query 159717 CTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGG 159776 | | ||||| || || |||||| || ||||| ||||| ||||| ||||| || ||| | Sbjct 777 CCTGCATAAAACCTTTGCTATTCCTCACGGAGGCGGAGGACCTGGGGTAGGACCAATTTG 718 Query 159777 TGTAGC 159782 ||| || Sbjct 717 TGTTGC 712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587789965605040