Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq4132 206 4e-48 >seq4132 Length=3213 Score = 206 bits (228), Expect = 4e-48 Identities = 412/607 (68%), Gaps = 35/607 (6%) Strand=Plus/Minus Query 200879 TTGATGAGATCTACCAGTTTGCTGCCGACATGGGTGGTGCTGGATACATCTTTACAGATG 200938 ||||||| | || || | ||||| || ||||| || || || ||||||||||| | Sbjct 1816 TTGATGAAGTATATCAACTGGCTGCAGATATGGGAGGAGCAGGTTACATCTTTACCGGAA 1757 Query 200939 AACACTCTGCTGACATCATGCACAACTCAGCAACTATTAATTTGAATGTTCTGAACGAAC 200998 | || |||| | | ||||| || |||||| | || ||| | ||||| || || Sbjct 1756 ATAACGATGCTAATGTAATGCATAATTCAGCAGCGATAAATCTTAATGTAGCAAAGGAGT 1697 Query 200999 AAGTTCAACTTAATAGGTTACTCGGTACAAACAAAACTAAGATCTTCTATTCTAGTTCTG 201058 || || | || | || ||||| ||| | || |||||| |||| Sbjct 1696 CTGT--AAATAAAAAAGT-------------CAAAA--AAG-TATTTTATTCTTCCTCTG 1655 Query 201059 CTTGTATGTACCCAGAACATAATCAATTAGATCCTGACAATCCTGATTGCCGTGAAAATT 201118 | || ||||| || ||| | || ||||| |||||| ||||| |||| |||| || Sbjct 1654 CCTGCATGTATCCGGAATACAACCAATTGGATCCTCTGAATCCAAATTGTGAAGAAAGTT 1595 Query 201119 CCGCCTACCCAGCAAATCCAGATTCAGAATACGGATGGGAAAAACTCTTTTCGGAGAGAC 201178 | || || || |||||||| |||||||||||||| ||||||||| | ||||| || || Sbjct 1594 CTGCATATCCGGCAAATCCTGATTCAGAATACGGTTGGGAAAAATTGTTTTCTGAACGAT 1535 Query 201179 TATATTTTGCCTATGCTCGCAACTATGACCTTGACGTTTCTGTGGCTCGCTATCATAACA 201238 ||| ||| || | | | ||||| | ||||| ||| | | || | | |||||| | Sbjct 1534 TATTTTTAGCTTTTAACAGAAACTACAATCTTGATGTTCGTATTGCAAGATTTCATAATA 1475 Query 201239 TTTTTGGTCCTGAAGGGACTTGGGATGGCGGAAAAGAAAAAGCCCCTGCAGCCATCTGTA 201298 |||||||||| |||| || ||| | ||||| || ||||||||||| || || || || | Sbjct 1474 TTTTTGGTCCGCAAGGCACCTGGAAAGGCGGTAAGGAAAAAGCCCCGGCTGCAATGTGCA 1415 Query 201299 GGAAGGTCGC---ATCTCTACCAGAAACAGGAGGCACCATTGAGGTGTGGGGAGACGGTT 201355 | |||| || | || || || ||| ||||| || ||||||||||| Sbjct 1414 GAAAGGCTGCTGAAGCT---CCGGA---AGGTTCTGAAATTGAAGTATGGGGAGACGGAC 1361 Query 201356 TGCAAACTAGATCGTTCCTTTACATTGATGAGTGTATCGAAGCAACTCGTA----GGTTG 201411 | ||||| | || || | || | ||||||||| ||||||| |||| | || Sbjct 1360 TACAAACGCGTTCCTTTTTATATGTAGATGAGTGTGTCGAAGC----CGTAATCCGATTA 1305 Query 201412 ATTGATTCTGACTTTGAAGGACCTGTAAACATTGGTTCTGAAGAGATGGTCACTATCAAT 201471 || | || || ||| ||||| ||||| |||||||||||||| ||||| |||| ||| Sbjct 1304 ATGAAATCCGATTTTCTGGGACCGGTAAATATTGGTTCTGAAGAAATGGTGTCTATAAAT 1245 Query 201472 GAGTTGG 201478 || |||| Sbjct 1244 GAATTGG 1238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744750606812720