Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_015296.1 Length=157061 Score E Sequences producing significant alignments: (Bits) Value seq29522 116 4e-21 seq11529 86.0 6e-12 >seq29522 Length=371 Score = 116 bits (128), Expect = 4e-21 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 137231 GGCCCCGTAGCTCAGTGGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAGT 137290 |||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 202 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAGT 261 Query 137291 CCAGCCAGGGTCACCAAAT 137309 ||||| ||| |||||||| Sbjct 262 CCAGCAGGGGCCACCAAAT 280 >seq11529 Length=1246 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 137631 TGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137690 |||||||||||||||||||||| ||||||||||||| |||||| | ||||| ||||| | Sbjct 394 TGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCCAGT 453 Query 137691 CATCGTCGCCAAATTGAAGTAG 137712 || | |||| ||| ||| || Sbjct 454 CAGAGGAGCCACATTTAAGAAG 475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 502243985227240