Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq19645 111 1e-19 seq2166 111 1e-19 seq14623 105 4e-18 seq28136 104 2e-17 seq32362 102 5e-17 seq34564 84.2 1e-11 >seq19645 Length=690 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| ||| | || |||| || ||||| || |||||||| Sbjct 538 TCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCATCCTCGAGCTGCTTCCCGGCAAAG 479 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | |||||||||||| ||||| |||||| Sbjct 478 ATCAGCCTCTGCTGGTCCGGAGGAATCCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTA 419 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | ||| || |||| ||||||||| || || || || |||||||| Sbjct 418 TCGATCGTGTCGGAGCTCTCCACCTCGAGGGTTATGGTCTTCCCGGTCAGCGTCTTCACG 359 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 358 AAGATCTGCAT 348 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| ||| | || | ||| | || || ||||| ||||||||||||| Sbjct 346 CCTCCCCTCAGCCTGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCCGCG 287 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || ||||| || ||||| ||||| || | |||||||| | || Sbjct 286 AGTGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGGGGA 227 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || |||||||| |||||| ||||| | |||| || | ||| || Sbjct 226 ATGCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATCGTGTCGGAGCTCTCCACC 167 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || ||||| || || || || |||||||| |||||||||||| Sbjct 166 TCGAGCGTGATGGTCTTCCCGGTAAGGGTCTTCACGAAGATCTGCATA 119 >seq2166 Length=5462 Score = 111 bits (122), Expect = 1e-19 Identities = 147/199 (74%), Gaps = 9/199 (5%) Strand=Plus/Plus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 ||||||| ||||| ||||||||||| |||| |||| || ||||| || |||||||| | Sbjct 774 CTTTCTGGATGTTGTAGTCCGAAAGCGTTCGGCCATCCTCGAGCTGCTTGCCGGCAAAAA 833 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | || || |||||||| |||| | || ||||| || || ||||| ||||| || Sbjct 834 TCAGGCGCTGCTGGTCAGGCGGAATACCTTCCTTTTCCTGGATTTTCTGCTTGAC--AT- 890 Query 34912 CTATCGATTCA-CCG---GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || || || | ||| || || | || ||||| || || || || |||||| Sbjct 891 -TGTCAATGCAGTCGGACGGCTCCACGTCCAACGTGATGGTCTTGCCGGTCAGGGTCTTC 949 Query 34968 ACAAAGATCTGCAT-ATTC 34985 |||||||||||||| |||| Sbjct 950 ACAAAGATCTGCATGATTC 968 >seq14623 Length=969 Score = 105 bits (116), Expect = 4e-18 Identities = 166/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | | |||| ||| | ||| ||||||||| ||||| || || | | Sbjct 716 CCACCCCTCAGACGGAGGACCAGGTGCAAGGTGGATTCTTTCTGGATGTTGTAATCGGCA 657 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| ||| |||| || ||||| ||||||||||| |||| || |||||||| | || Sbjct 656 AGGGTTCTACCATCCTCGAGCTGCTTTCCGGCAAAGATTAAACGCTGCTGGTCAGGGGGA 597 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTC 34930 | ||||| ||||| ||||| ||||| || |||| || | ||| || ||| Sbjct 596 ATGCCCTCTTTGTCCTGGATCTTGGCCTTGAC--AT--TATCAATAGTATCCGAGCTCTC 541 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | ||| || || ||||| ||||| || || ||||| ||||||||| Sbjct 540 AACTTCCAAGGTGATCGTCTTTCCAGTGAGGGTTTTAACAAAAATCTGCATA 489 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||||||||| || ||||| | |||| |||| |||| || ||||||||||| ||||| Sbjct 909 TTCTTTCTGAATATTGTAGTCAGCAAGGGTTCGGCCATCTTCGAGCTGTTTTCCAGCAAA 850 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | || |||||||| ||||| || || | Sbjct 849 GATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGTATCTTAGCCTTCAC--A 792 Query 34910 TGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| | ||| || ||| || || | || ||||| || || || || || | Sbjct 791 T--TGTCGATGGTGTCCGAGCTCTCCACTTCCAAAGTAATGGTCTTACCTGTTAGGGTTT 734 Query 34966 TCACAAAGATCTGCAT 34981 | |||||||||||||| Sbjct 733 TGACAAAGATCTGCAT 718 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || ||||| || ||||| | ||| |||| | || || ||||| ||||||||||| Sbjct 453 TTCCTTTTGAATATTGTAGTCTGCCAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCAAA 394 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 ||| || ||||||||||| |||| | || |||||||| ||||| ||| || | Sbjct 393 TATCAGACGTTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTTAC--A 336 Query 34910 TGCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | || || | ||| || |||||| || | ||||| || || || || || || | Sbjct 335 T--TGTCAATGGTATCCGAGCTCTCAACTTCCAACGTTATCGTCTTACCAGTCAGGGTTT 278 Query 34966 TCACAAAGATCTGCAT 34981 | || ||||||||||| Sbjct 277 TGACGAAGATCTGCAT 262 >seq28136 Length=407 Score = 104 bits (114), Expect = 2e-17 Identities = 143/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| || |||| || | ||| |||| |||| ||| || || |||||| Sbjct 202 TCTTTCTGAATGTTGTAATCCGCCAGAGTGCGTCCATCTTCCAACTGCTTGCCCGCAAAT 143 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||||||||| |||| | ||| || ||||| || || || || || Sbjct 142 ATCAGACGTTGCTGGTCGGGCGGGATCCCTTCTTTGTCCTGGATTTTGGCCTTCAC--AT 85 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || | | ||||| || | ||||||||| || ||||| || ||||| Sbjct 84 --TGTCGATTGTATCGCTGCTTTCAACTTCTAAGGTTATGGTCTTGCCCGTCAGGGTCTT 27 Query 34967 CACAAAGATCTGCATATT 34984 || ||||||||||| || Sbjct 26 TACGAAGATCTGCATCTT 9 >seq32362 Length=298 Score = 102 bits (112), Expect = 5e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| || | ||||| ||| ||| ||||| |||||||| || | || |||| |||| Sbjct 218 CAAGACAAGGTGAAGTGTAGATTCCTTCTGGATGTTATAATCGGCCAGAGTTCGCCCATC 159 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||||||||| || |||||||| || | ||||| || | || | ||| |||||||| Sbjct 158 CTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGATCAGGTGGAATCCCTTCCTTGTC 99 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||| ||| ||| ||| | |||| || | |||||| || | || || || Sbjct 98 CTGAATTTTCGCTTTTACGTTATCAATCGTATCGGAGCTCTCAACCTCCAGTGTGATAGT 39 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || | ||||||||||| ||||||||| Sbjct 38 CTTGCCTGTCAACGTCTTCACAAATATCTGCATA 5 >seq34564 Length=234 Score = 84.2 bits (92), Expect = 1e-11 Identities = 132/185 (71%), Gaps = 8/185 (4%) Strand=Plus/Minus Query 34801 TGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTT 34860 |||| ||||||| |||| | | | || || ||||| || || ||||| || || | | Sbjct 234 TGTTGTAGTCCGCAAGGGTCCTCCCGTCCTCGAGCTGCTTACCCGCAAAGATAAGCCTCT 175 Query 34861 GCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT- 34919 ||||||| | || | ||||||||||| ||||| || ||| ||||||| Sbjct 174 GCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGT----TATCGATG 119 Query 34920 -TCACCG-GC-CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATC 34976 | ||| || ||| || |||| ||| ||||| || || ||||| ||||| ||||||||| Sbjct 118 GTGTCCGAGCTCTCCACCTCGAGGGTGATGGTCTTCCCGGTGAGGGTCTTGACAAAGATC 59 Query 34977 TGCAT 34981 ||||| Sbjct 58 TGCAT 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324492990941592