Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1997 239 5e-58 seq451 120 3e-22 >seq1997 Length=5797 Score = 239 bits (264), Expect = 5e-58 Identities = 626/932 (67%), Gaps = 30/932 (3%) Strand=Plus/Plus Query 18661 ACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAAT 18720 ||||| ||| |||||||| | |||||||||||| |||||||| ||||| |||| ||| Sbjct 1816 ACTCCAGCTTTCTGATATTCTGAAACTCTTTTTTCGAAGAAATTTGTTTTACCCTGTAAA 1875 Query 18721 GATATACAT-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA 18779 || || ||| |||||||||||||| ||||| ||||| | | || ||||||| Sbjct 1876 GAGAT-CATATCCATAAAATCAAACGGATTCGCAGAGTTATACACTCTTGCACATCCTAA 1934 Query 18780 TTCTAATAGTAGTCTATCCGCTACAAATT-TAA-TATATGTGTTCATCATATCACAATTC 18837 ||||| || || ||| || | |||||||| ||| ||| ||||| ||| | | ||| Sbjct 1935 TTCTACTAATAATCTGTCGGTTACAAATTCTAAGTAT-TGTGT-CATTAAGTTTGCGTTC 1992 Query 18838 ATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCC 18897 ||||| ||||| | || || || | ||||| | ||||||| ||| |||| | ||| Sbjct 1993 ATTCCAATTAAGCTCACCGGAAGAGATTCTGTTATAAATTCTCTTTCAATATCAAGAGCC 2052 Query 18898 TCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTT-TAAACAT 18956 | | | || | || ||| ||| || | ||| | || || | | Sbjct 2053 TGTACCAGGATTTCTGTAATTCTGGCTT--TTGAAACTTTATTAACGAGGTGGTGGTTGT 2110 Query 18957 -CAAA--CA-TGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 |||| || ||||||||||||||||| || || || | ||||||||||| |||| Sbjct 2111 GCAAATGCACTGCAAAATCACAATGTACGCCTTCATCACGTGAAATCAATTCATTTGAAA 2170 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAG 19072 | || | ||| ||||||| ||| | |||||| ||||| | |||||| |||| ||| | Sbjct 2171 AAGTAAGACCCGGCATCAATCCACGTTTTTTCAACCAATAGATAGAACAGAATGCTCCTG 2230 Query 19073 AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCAT 19132 | || || || |||||||| ||||||||||||| |||||||| || | | ||| Sbjct 2231 AGAAAAAGATTCCTTCTACGGCTGCAAAAGCAATCAGTCTTTCAGCAAA---TGAATC-G 2286 Query 19133 TATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTA 19192 || | ||||||||| | ||||| || || || || || | || | | || | Sbjct 2287 GAT--TCAATCCATTTTAAAGCCCAGTCCGCTTTTTTCTTAATTGCCGGAAATACTTCCA 2344 Query 19193 TAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAAC 19252 || | || || | || || |||||| ||||| | ||| |||| | | Sbjct 2345 AAGCGTGGAAAAGCTGGTCCTTTTCTGCTTCATCTTTTACATACGTATCAATCAGAAGAG 2404 Query 19253 TGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTT 19312 || |||| || ||||| || || || || |||||||| ||| || | |||| Sbjct 2405 AATAGGTTTCGCTGTGGATATTCTCCATCATGATTTGGAATCCGTAGAAAAATTTAGCTT 2464 Query 19313 -CTGTTATCTGTACTTC-ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATC 19370 | | ||| || ||||| |||||||| | || ||| |||||||| || || || || Sbjct 2465 CCGGATAT-TGAACTTCGTTTACAAAAT-TCTCTGCCAGGTTTTCATTCACAATACCGTC 2522 Query 19371 ACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATC-----TGAGGTT 19425 || |||||||| ||||| | |||||| ||||||| ||| ||||| | || || Sbjct 2523 TGATGCAGCAAAAAAAGCTAAAATATGTTTGATAAAATATTTCTCATCATTATTCAGCTT 2582 Query 19426 AATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAA 19485 | || ||||| || | ||| | ||||| | |||||| | ||||||||| Sbjct 2583 ATTG--TTCCAGTCTGATAAATCCTGGTGCAAATCAATTTCTTCGGCAGTCCAAAAACTT 2640 Query 19486 GCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAAT 19545 || || ||| |||||| | ||| |||||| | | || |||||| || || || || Sbjct 2641 GCTTCCATTTTCTTATACCACTCCCAAATATCATGGTGTTTTATAGGGAAAATCACGAAA 2700 Query 19546 CTATTTTTATTTTCTTTAAGAATAGGTTCCAT 19577 | | ||| || |||| | ||| ||||| || Sbjct 2701 CGGTCTTTGTTCTCTTGTAAAATTGGTTCTAT 2732 Score = 172 bits (190), Expect = 6e-38 Identities = 599/931 (64%), Gaps = 10/931 (1%) Strand=Plus/Plus Query 47883 ATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCA 47942 ||||| || || |||||||| || | |||| | | ||| || | || ||||| | | Sbjct 219 ATAGAAGCCAGGTTACATACCGCAATTTCATCTTTAGAAGTGTACTCCATGATTTCTGTA 278 Query 47943 CATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATG 48000 || || ||| | | ||| || |||| |||| || || ||| | | | | Sbjct 279 CACAGGTTAGAAGAGCGGATTGTTCCCAGGTTTTTCTGGTTTGATTTACGGTTTGCC--G 336 Query 48001 CGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCC 48060 | || || || ||||| | |||||||| ||||| || |||||||| | || || || Sbjct 337 CATCTTTATACAGCATGTATGGTGTTCCGGTTTCAATTTGAGATTCCAGAATTTTTTCCC 396 Query 48061 AAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATA 48120 ||| || ||||| || ||| || | | | ||| || |||||| | Sbjct 397 AAAGTTCTCTTGCCTTAATGGTTTTTCTTCCTCTGCCCTGTTCTTCATAAGAAGTATAAA 456 Query 48121 ACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCA 48180 | |||||||| || || || | || || | || || ||||| || |||||||||| Sbjct 457 GCGCTTCAAATTCTTCACCGTAAATATCATAAAGTCCCGGGCATTCGTTTGGACACATCA 516 Query 48181 ATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTA 48240 | | ||| ||| | | || | |||| || | || | |||| | || | Sbjct 517 ACGTCCATGTAGAATCTTCCTGAACACGTTTCATGAACAAGTCCGAAGTCCACATGGCAA 576 Query 48241 TAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGT 48300 |||||||| | | | | |||||| || ||| || | || || ||||| || | Sbjct 577 AGAATAAATCACGCGCACGCATTTCTTCTTTTCCATGGTTTTTCTTCAGGTCAAGGAAAT 636 Query 48301 CCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTAC 48360 | | |||||||| ||||||| ||| | ||| || || | ||| ||||| | Sbjct 637 CAAAAATATCAGCGTGCCATGTTTCGATATAGATAGCAAAACTTCCTTTGCGTTTTCCTC 696 Query 48361 CTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCAT 48420 |||| || |||| ||| | || |||| || |||| | ||||| || ||||| || | Sbjct 697 CTCCCTGGTCTACATAACGAGCGGTATCATTGAAAACACGCAACATCGGAACAATTCCGT 756 Query 48421 TTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAA 48480 |||| | || || ||||| ||||| || | || | | |||| ||||||| Sbjct 757 TTGACGTTCCGTTTGTTCCGCGGATATAGGAACCCGTGGCACGAACATTATGGATTGAAA 816 Query 48481 TACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTC 48540 || || || || ||| || || ||| || | || || ||||| ||||||| Sbjct 817 GCCCGATTCCTCCAGCCGATTGTGAAATTTTGGCTGTTTGCTTTAGCGTATCGTAAATTC 876 Query 48541 CTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAG 48600 | || ||||| || || ||| | || || || |||||||||||| | || Sbjct 877 CGTCGATACTGTCGTCCTGCATTGCCAGAAGGAAGCAGGAAGACATTTGCGGTTTTGGAG 936 Query 48601 TTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTAT 48660 |||| | ||| ||||| ||||| | |||||| |||| | |||| || | || | || Sbjct 937 TTCCGGCATTGAATAACGTTGGCGTTGCATGCGTAAAGAACTTCTTGGACATCAGGTCAT 996 Query 48661 ATGTTTCAATAACAGAATCTATATCCCATT--GATGTATACCTATAGATACACGCATTAA 48718 | ||||| | || | ||| | | |||| ||| || || | | |||||||| || Sbjct 997 AAGTTTCCAATACTGCATCCAGGT--CATTCAAATGGATTCCAACGGCAACACGCATCAA 1054 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | ||| |||||||| |||||||| ||||||||| | ||||| || ||||| Sbjct 1055 CATGTGTTGTGGTCTTTCCACAATTTTTCCATTTATTTTTAGCAGATACGAACGCTCCAA 1114 Query 48779 TGTTTTAAAACCAAAATAGTTGTA--TGAAA 48807 || ||||| || ||||| | ||| ||||| Sbjct 1115 CGTCTTAAATCCGAAATAATCGTAGTTGAAA 1145 Score = 96.9 bits (106), Expect = 4e-15 Identities = 191/279 (68%), Gaps = 9/279 (3%) Strand=Plus/Plus Query 48926 tttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATC 48985 |||||| || | || ||||| || || || | ||| || || || || |||||||| Sbjct 1289 TTTTTTGGTATTCTTGTGAAGGTTTGAAATTGCTATCCTTGCTGCCAACTGGGCATAATC 1348 Query 48986 TGGATG---AATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATATCTAATTCTTT 49042 ||||| |||||| | || || | |||||||||| | | || || ||| Sbjct 1349 CGGATGGGCAATTGTCATTGCTG--CT-GCGGTTTCTGCTGCAAGATTGTCCAACTCTGA 1405 Query 49043 AGTAGTTACACCTGTATATATTCCTTGAATAACTTTCATTGCTATATTTACTGGATCTAT 49102 ||| || ||||| ||| | || | ||||| |||||||| ||||| ||||||| Sbjct 1406 AGTTGTAACACCATCATACAACCCCTCGATAACGCGCATTGCTACTTTTACCGGATCTAC 1465 Query 49103 ATGATCCATATCCAGTCCATAACATAAtttttttATTCTAGATGTAATTTTATCAAACAT 49162 | |||| | || || || ||||||||||| |||||| ||||| ||||||||||| Sbjct 1466 AAGATCGTT---CAAGCCGTAGCATAATTTTTTAATTCTATCCGTAATCTTATCAAACAT 1522 Query 49163 TATATTCTCTTTACGACCGTCACGTTTTATAACAAACAT 49201 || |||| | ||||||| | ||| | ||| |||| Sbjct 1523 TACCGGCTCTCTGTGACCGTCTCTTTTAACTACATACAT 1561 >seq451 Length=16219 Score = 120 bits (132), Expect = 3e-22 Identities = 466/730 (64%), Gaps = 2/730 (0%) Strand=Plus/Plus Query 48124 TCTCAAATTCATCCCCATA-CACATTATCTAACCCAGGACATTCATTAGGACACATCAAT 48182 ||||||||||||| || | ||| | | | |||||| ||| || ||||| | ||| Sbjct 8742 TCTCAAATTCATCTCCCCAGCAC-TCGTAGAGACCAGGAGCTTCGTTTGGACAAAACAAA 8800 Query 48183 GACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA 48242 ||| | ||| | ||| |||| |||| || | ||| | |||||| ||||| | Sbjct 8801 CTCCACTTGCCATTACTTTCCACTCGTTTCATGAACAGATCAGATATCCATAGAGCGTAA 8860 Query 48243 AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCC 48302 || || || | | || | |||| |||| ||| || || || || || || Sbjct 8861 AACAAGTCACGCGCTCGGTGCAGTTCACTGCCGTGATTTTTTCGGAGATCGAGGAACTCA 8920 Query 48303 ATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCT 48362 | | || |||||||||||||| || || ||||| | |||| |||||| || Sbjct 8921 AACACGTCTGCATGCCATGGTTCCAAGTAGATTGCAAAGGAACCTTTGCGTTTACCTCCA 8980 Query 48363 CCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTT 48422 ||||| || | ||| | || || | |||| | || | ||||| |||| ||||| || Sbjct 8981 CCTTGGTCCACATACCGAGCCGTGTCGTTAAACACGCGCAACATGGGGATGATACCGTTG 9040 Query 48423 GATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATA 48482 || || || || || || || || |||||| ||||| || || Sbjct 9041 GAAGACCCGTTAGTACCACGGATGTAGCTGTTCGTAGCTCGGATATTGTGCATGCTGATC 9100 Query 48483 CCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCT 48542 || ||||| || ||| || || || |||||| | || | |||||||| |||||| Sbjct 9101 CCAATACCTCCCGCCCACTTTGAGATACAAGCACATTGCTTCAATGTATCATAGATTCCT 9160 Query 48543 TCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTT 48602 || || ||||||| ||| | || |||||| ||| | |||||| | ||| Sbjct 9161 TCAATTGAATCATCTTGCATGGCAAGTAAAAAACACGAAGATAATTGCGGCCGTGGAGTG 9220 Query 48603 CCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATAT 48662 || | |||||| || || || | ||||| |||| | || | || | ||||| || Sbjct 9221 CCAGCATTAAACAACGTGGGCGTCGCATGGGTAAAGAACTTTTGAGACATCAATTCGTAC 9280 Query 48663 GTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATA 48722 || || | | | | | || | | | ||| || || | || || ||||| | ||| Sbjct 9281 GTCTCTAAAGCTGCTTGAATGTTGCTCTTATGAATCCCAAGAGCAACGCGCATAATCATT 9340 Query 48723 TATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTT 48782 | || |||| |||||| | |||| ||| | ||||| || | | |||| |||| Sbjct 9341 TGCTGGGGTCGTTCAACCACTTTGCCATTCACGCGGAAAAGGTAACCTCTCTCCAGTGTT 9400 Query 48783 TTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTT 48842 ||||| ||||| || | ||| |||||| || | ||| |||| || |||| | Sbjct 9401 TTAAACCCAAAGTAATCGTACTCAAAGTCCCGGTCGTGAATGATTGCCGAGTTTAATTCA 9460 Query 48843 TCCTTATGTT 48852 ||||| |||| Sbjct 9461 TCCTTGTGTT 9470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561859090191960