Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_016158.1 Length=49576 Score E Sequences producing significant alignments: (Bits) Value seq956 96.9 1e-15 seq19238 93.3 1e-14 >seq956 Length=9855 Score = 96.9 bits (106), Expect = 1e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 31522 AGGCCCATATAGCTGATATCGAGGCAGACCATACCGTCGCGCGGAACCAGATAAGCCAGT 31581 |||||||| |||||||| |||||||||| | | ||||||||||| ||||| || ||| | Sbjct 5490 AGGCCCATGTAGCTGATGTCGAGGCAGATCTTGCCGTCGCGCGGCACCAGGTAGGCCTGC 5549 Query 31582 TTGCTGGCAGGGTTCAGGCTAATGCCGACAGCTGCAACGTTGA 31624 || | || ||||||||||| ||||||| || || | ||||| Sbjct 5550 TTCTTCGCCGGGTTCAGGCTGATGCCGATGGCGGCGATGTTGA 5592 >seq19238 Length=710 Score = 93.3 bits (102), Expect = 1e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 43440 CACATCACCTTCATCATTCCCATGCCAAAAAGCTGGAGCCAGAAGAAGCGTGCGCAACTT 43499 ||||| || || ||| | || ||||| ||||||||| |||||||||| | | | Sbjct 294 CACATTACATTTATCCTCCCGATGCCCCCGAGCTGGAGCAAGAAGAAGCGCCAGGAGATG 235 Query 43500 AACGGCCAGGCTCATCAGCAGAAACCGGATAAAGACAACCTGGAAAAGGCGCTTCTCGAT 43559 || | | || ||||||||||| || ||||| |||||||| ||||| || | ||| Sbjct 234 GCGGGGAAACCCCACCAGCAGAAACCCGACAAAGATAACCTGGAGAAGGCCCTGATGGAT 175 Query 43560 GCCATTTTCGACGACGACAGCCGCGTCTGGGATGGCCGGGTGACAAAACTTTGGGGAGAG 43619 ||||| | | || ||| || |||||||| || ||||| || | ||||| ||| Sbjct 174 GCCATCTATGCGGATGACGCCCATATCTGGGATTCTCGAGTGACGAAGCGCTGGGGTGAG 115 Query 43620 AAGGGACAGATCATTATTGGGGAG 43643 || |||||||| || |||||| Sbjct 114 GTAGGTCAGATCATCATCGGGGAG 91 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158454699822684