Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_016650.1 Length=48072 Score E Sequences producing significant alignments: (Bits) Value seq15871 91.5 5e-14 seq482 87.8 6e-13 seq28703 82.4 2e-11 seq4223 80.6 8e-11 >seq15871 Length=886 Score = 91.5 bits (100), Expect = 5e-14 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 46649 GTAGCTCAATTGGTAGAGCACCGGTCTCCAAAGCCGGTGGTTGGGGGTTCGAGTCCCTCC 46708 ||||||||||||| |||||| ||||||||||| ||| |||||||||||||||||||||| Sbjct 629 GTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGAGTCCCTCC 688 Query 46709 GGGCCTGC 46716 ||| ||| Sbjct 689 TGGCGTGC 696 >seq482 Length=15596 Score = 87.8 bits (96), Expect = 6e-13 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 46649 GTAGCTCAATTGGTAGAGCACCGGTCTCCAAAGCCGGTGGTTGGGGGTTCGAGTCCCTCC 46708 |||| |||||||||||||| ||||||||||| ||| ||||||||||||||||||||| Sbjct 68 GTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGGGGGTTCGAGTCCCTCC 9 Query 46709 GGGCCTGC 46716 ||||||| Sbjct 8 TGGCCTGC 1 >seq28703 Length=392 Score = 82.4 bits (90), Expect = 2e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 46649 GTAGCTCAATTGGTAGAGCACCGGTCTCCAAAGCCGGTGGTTGGGGGTTCGAGTCCCTCC 46708 ||||||||||||| ||||| ||||||||||| ||| |||||||||||||| ||||||| Sbjct 267 GTAGCTCAATTGGCAGAGCGACGGTCTCCAAAACCGTAGGTTGGGGGTTCGATTCCCTCC 208 Query 46709 GGGCCTGC 46716 | ||||| Sbjct 207 TGACCTGC 200 >seq4223 Length=3159 Score = 80.6 bits (88), Expect = 8e-11 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 46648 CGTAGCTCAATTGGTAGAGCACCGGTCTCCAAAGCCGGTGGTTGGGGGTTCGAGTCCCTC 46707 ||||||||| ||||||||||||||||||||||| |||| || | | ||||||||| ||| Sbjct 1531 CGTAGCTCAGTTGGTAGAGCACCGGTCTCCAAAACCGGGTGTCGCGAGTTCGAGTCTCTC 1590 Query 46708 CGGGCCTGC 46716 || ||||| Sbjct 1591 CGCCCCTGC 1599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 153643930947612