Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_016653.1 Length=46586 Score E Sequences producing significant alignments: (Bits) Value seq28703 82.4 2e-11 seq15871 82.4 2e-11 seq482 82.4 2e-11 >seq28703 Length=392 Score = 82.4 bits (90), Expect = 2e-11 Identities = 67/79 (85%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 45156 TCTAGGGCACGTAGCTCAATTGGATAGAGCCCCGGTCTCCAAAGCCGGTGGTTGGGGGTT 45215 |||||| || ||||||||||||| ||||| ||||||||||| ||| ||||||||||| Sbjct 276 TCTAGGTCA-GTAGCTCAATTGGC-AGAGCGACGGTCTCCAAAACCGTAGGTTGGGGGTT 219 Query 45216 CGAGTCCCTCCGGGCCTGC 45234 ||| ||||||| | ||||| Sbjct 218 CGATTCCCTCCTGACCTGC 200 >seq15871 Length=886 Score = 82.4 bits (90), Expect = 2e-11 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 45166 GTAGCTCAATTGGATAGAGCCCCGGTCTCCAAAGCCGGTGGTTGGGGGTTCGAGTCCCTC 45225 ||||||||||||| ||||| ||||||||||| ||| ||||||||||||||||||||| Sbjct 629 GTAGCTCAATTGGC-AGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGAGTCCCTC 687 Query 45226 CGGGCCTGCAAC 45237 | ||| ||| || Sbjct 688 CTGGCGTGCCAC 699 >seq482 Length=15596 Score = 82.4 bits (90), Expect = 2e-11 Identities = 66/77 (86%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 45158 TAGGGCACGTAGCTCAATTGGATAGAGCCCCGGTCTCCAAAGCCGGTGGTTGGGGGTTCG 45217 |||| || |||| |||||||| |||||| ||||||||||| ||| |||||||||||| Sbjct 75 TAGGTCA-GTAGTTCAATTGG-TAGAGCGTCGGTCTCCAAAACCGAATGTTGGGGGTTCG 18 Query 45218 AGTCCCTCCGGGCCTGC 45234 ||||||||| ||||||| Sbjct 17 AGTCCCTCCTGGCCTGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148890737763864