Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_016655.1 Length=51342 Score E Sequences producing significant alignments: (Bits) Value seq776 181 3e-41 seq6884 167 8e-37 seq10726 161 3e-35 seq10022 159 1e-34 seq32881 120 1e-22 seq25603 105 2e-18 >seq776 Length=11329 Score = 181 bits (200), Expect = 3e-41 Identities = 239/327 (73%), Gaps = 7/327 (2%) Strand=Plus/Plus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||| ||||| ||||||||||| |||||||||||||||||| | ||||| ||||| || | Sbjct 10528 ACGGCAAGCTCAGCTGCCAGCTATACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCT 10587 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGG 24939 |||| ||||| |||||||||||||||||||| | | || | || || ||| ||| Sbjct 10588 TCAACATCGCCAGCTACGCGCTGCTGACCCACATGCTGGCCCAGCAATGCGACCTGCAGG 10647 Query 24940 TCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGG 24999 | ||||| ||| |||||||||| |||||| |||| | || |||||| || |||| Sbjct 10648 TGGGCGACTTCGTCTGGACCGGTGGCGACTGCCACATCTACAACAACCACTTCACCCAGG 10707 Query 25000 -CGACCGA-ACAACTGTCGCGCACGCACACGGGCTATCCGTGGCTGGCGCTGAATCACCG 25057 ||| || || ||| ||||| || | | ||| ||| |||| | | || | ||| Sbjct 10708 TCGA--GACCCAGCTGGCGCGCCAGCCCTTCGCCTACCCGACGCTGCAGATCAAGCGCCG 10765 Query 25058 ---CGACTCGATCTTCGAGTACACCGCCGACGACGTCATATTCCTCGGCTACCGGCCGCA 25114 |||||| ||||||| ||| ||| ||| || || ||||||||| || || Sbjct 10766 GCCCGACTCCATCTTCGGCTACGAGTACGAGGACTTCGAGGTCGTCGGCTACCAGCACCA 10825 Query 25115 CCCGGTCATCAAGGCCCCCGTGGCCGT 25141 | | ||||||||||||||||||||| Sbjct 10826 CGAGCCCATCAAGGCCCCCGTGGCCGT 10852 >seq6884 Length=2068 Score = 167 bits (184), Expect = 8e-37 Identities = 242/333 (73%), Gaps = 13/333 (4%) Strand=Plus/Plus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||| ||||| |||||||||||||| |||||||||| ||| | |||||||||||||||| Sbjct 1588 ACGGCAAGCTCAGCTGCCAGCTCTATCAGCGCAGCGGCGACATCTTCCTCGGCGTGCCGT 1647 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGG 24939 |||| ||||| ||||||||||||||||| || | | ||| | | || || | Sbjct 1648 TCAACATCGCCAGCTACGCGCTGCTGACGCACATGGTGGCGCAGGCGACGGGTCTCGGCG 1707 Query 24940 TCGGCGAATTCATCTGGACCGGC--GGCGACGTCCACCTGTATTCGAACCACGTCGAGCA 24997 ||||||| ||| || || || ||||||| |||||||||||||||||| ||| || Sbjct 1708 TCGGCGATTTC--GTGCACACGCTGGGCGACGCGCACCTGTATTCGAACCACTACGACCA 1765 Query 24998 GGCGACCGAACAACTGTCGCGC-ACGCACACGGGCTATCCGTGGCTGGCGCTGAATCACC 25056 |||| ||||||||| ||||| | | | || | | ||| |||| || |||| || Sbjct 1766 GGCGCGTGAACAACTGGCGCGCGAACCCCGCGCG-TTGCCGAAGCTGCACCTCAATC-CC 1823 Query 25057 GCG---ACTCGA--TCTTCGAGTACACCGCCGACGACGTCATATTCCTCGGCTACCGGCC 25111 | | || ||| | |||| | |||| ||||||| || ||| |||||| || Sbjct 1824 GAGGTCAC-CGATTTGTTCGGCTTCACCTTCGACGACATCGAGATCCATGGCTACGACCC 1882 Query 25112 GCACCCGGTCATCAAGGCCCCCGTGGCCGTGTA 25144 ||| |||| |||||||| || ||||| || || Sbjct 1883 GCATCCGGCGATCAAGGCGCCGGTGGCGGTCTA 1915 >seq10726 Length=1340 Score = 161 bits (178), Expect = 3e-35 Identities = 238/329 (72%), Gaps = 11/329 (3%) Strand=Plus/Plus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||| ||||| ||||||||||||||||||||||||| ||| | |||||||||||||||| Sbjct 398 ACGGCAAGCTCAGCTGCCAGCTCTACCAGCGCAGCGGCGACATCTTCCTCGGCGTGCCGT 457 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTT--CGCGGACCAGCTCGGACTGAA 24937 |||| ||||| |||||||||||||||||||| | | ||| | ||| ||| ||| Sbjct 458 TCAACATCGCCAGCTACGCGCTGCTGACCCACATGGTGGCGCAGGCCA--CCGGCCTGGG 515 Query 24938 GGTCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCA 24997 || ||||| ||| | || || |||| ||||||||||||||||| ||||||| Sbjct 516 CGTGGGCGACTTCGTGCATACGCTGGGTGACGCGCACCTGTATTCGAACCATTTCGAGCA 575 Query 24998 GGCGACCGAACAACTGTCGCG-CACGCACACGGGCTATCCGTGGCTGGCGCTGAATC--A 25054 ||| ||| || |||||||| | | | || ||| ||| |||| | |||| | Sbjct 576 GGCCCGCGAGCAGCTGTCGCGTGAACCGCGCGCGCT-GCCGAAGCTGTGGTTGAACCCGG 634 Query 25055 CCGCGACTCGA--TCTTCGAGTACACCGCCGACGACGTCATATTCCTCGGCTACCGGCCG 25112 | ||| ||| | |||| | | ||||||| || || ||||||| ||| Sbjct 635 AGGTGAC-CGACCTGTTCGGCTTCCAGTTCGACGACATCCGCATCGACGGCTACGACCCG 693 Query 25113 CACCCGGTCATCAAGGCCCCCGTGGCCGT 25141 ||||||| ||||||||| || ||||| || Sbjct 694 CACCCGGCCATCAAGGCGCCGGTGGCGGT 722 >seq10022 Length=1431 Score = 159 bits (176), Expect = 1e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24821 CGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGTT 24880 ||| || |||||||||||||| |||||||||||||| ||| | ||||| ||||||||||| Sbjct 582 CGGCAAACTGAGCTGCCAGCTGTACCAGCGCAGCGCCGACATCTTCCTGGGCGTGCCGTT 523 Query 24881 CAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGGT 24940 ||| ||||| |||||||| ||||| || || | | ||| | ||| || ||| | || Sbjct 522 CAACATCGCCAGCTACGCCCTGCTCACGCACATGGTGGCGCAACAGTGCGACCTGGAAGT 463 Query 24941 CGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGGC 25000 ||||| |||||||||||||||||||| |||| | || ||||| | |||||||| Sbjct 462 GGGCGACTTCATCTGGACCGGCGGCGATTGCCACATCTACAGCAACCATGCCGAGCAGGT 403 Query 25001 GACCGAACAACTGTCGCGCACGC 25023 | | || ||||||||| ||| Sbjct 402 GGCGCTGCAGCTGTCGCGCGCGC 380 >seq32881 Length=284 Score = 120 bits (132), Expect = 1e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24821 CGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGTT 24880 ||| | |||| |||||||| ||||||||||| |||||| | || || ||||||||||| Sbjct 144 CGGCACGCTGTCGTGCCAGCTGTACCAGCGCAGTGCGGACATCTTTCTGGGCGTGCCGTT 85 Query 24881 CAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGGT 24940 ||| || ||||||||||| |||||||| || | | ||| | ||| || || | || Sbjct 84 CAACATTGCGAGCTACGCCCTGCTGACGCACATGGTGGCGCAGCAGTGCGACCTTCAAGT 25 Query 24941 CGGCGAATTCATCTGGACCGGCGG 24964 ||||| ||||||||||||||||| Sbjct 24 TGGCGACTTCATCTGGACCGGCGG 1 >seq25603 Length=477 Score = 105 bits (116), Expect = 2e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 24834 TGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGTTCAATATCGCGAGC 24893 |||||||| ||||||||||| ||||| ||||||| ||||| ||||| |||||||| ||| Sbjct 246 TGCCAGCTTTACCAGCGCAGTGCGGATCTATTCCTTGGCGTTCCGTTTAATATCGCCAGC 305 Query 24894 TACGCGCTGCTGACCCAT 24911 |||||||||||||||||| Sbjct 306 TACGCGCTGCTGACCCAT 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164103514871472