Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq15573 187 8e-43 seq7683 163 9e-36 seq2464 145 2e-30 seq4487 141 3e-29 seq9150 132 2e-26 seq20301 120 1e-22 seq24263 107 6e-19 seq6804 107 6e-19 >seq15573 Length=905 Score = 187 bits (206), Expect = 8e-43 Identities = 204/270 (76%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| || || | || |||||||| |||||||| |||||||||| |||||||| || || Sbjct 479 CCCGGTCATTGCCCTTTCGCAGCTGAACCGCTCGTTGGAGCAGCGCCCGAACAAACGCCC 420 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 | ||| || ||| |||| || || || || ||||||||||||||||| ||||||||||| Sbjct 419 GGTGAACTCCGACTTGCGTGAATCTGGTGCAATCGAGCAGGACGCCGACGTGATCATGTT 360 Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGAT 21492 |||||||||||||||||| |||||||| || ||| || || |||||||| || | || Sbjct 359 CGTGTACCGCGACGAGGTGTACCACCCCGAGACCGAGCACAAGGGCGTGGCGGAAATCAT 300 Query 21493 CATCGCGAAGCACCGCAACGGCGAGCCAAGCACT---GTTCGGTGCGCGTTCCTGGGTAA 21549 ||||| || || || |||||| || | | | || || | ||||| | || || Sbjct 299 CATCGGCAAACAGCGTAACGGC---CCCATCGGTTTCGTGCGTTTGGCGTTTATCGGCAA 243 Query 21550 GTACTCGCGATTCGAGCAGCTCGCTCCGGG 21579 |||| | || |||||| | | || ||||| Sbjct 242 GTACACCCGGTTCGAGAACTTGGCGCCGGG 213 >seq7683 Length=1870 Score = 163 bits (180), Expect = 9e-36 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21287 AAGCTGCTGGCGATGGAGCTTGGTATCCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCC 21346 ||| ||||||| | ||| || ||| ||||||| ||||||||||||||||||||| Sbjct 1504 AAGATGCTGGCCAAGGAACTGCAGTGCCCGGTGATCGCGCTGTCGCAGCTCAACCGCTCG 1563 Query 21347 CTGGAGCAGCGGCCGAACAAGCGACCGATGATGTCGGACCTGCGCGAGTCCGGGGCGATC 21406 |||| ||||| | ||||||| || |||||||| || |||||||| || || || ||| Sbjct 1564 GTGGAACAGCGCACCGACAAGCGGCCCATGATGTCCGATCTGCGCGAATCGGGCGCCATC 1623 Query 21407 GAGCAGGACGCCGATGTGATCATGTTCGTGTACCGCGACGAGGTCTACCACCCGGATACC 21466 |||||||| || || | ||||||||| | ||||||||||| |||| || ||| || Sbjct 1624 GAGCAGGATGCGGACATCATCATGTTCATCTACCGCGACGACTACTACAACAAGGACTCC 1683 Query 21467 CAGTACCGCGGCGTGGCTGAGTTGATCATCGCGAAGCACCGCAACGGC 21514 || | | | |||||| ||| | ||||||| ||||| || |||||| Sbjct 1684 AAGGAGCCCAACGTGGCCGAGGTCATCATCGGCAAGCAGCGGAACGGC 1731 >seq2464 Length=4980 Score = 145 bits (160), Expect = 2e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 21287 AAGCTGCTGGCGATGGAGCTTGGTATCCCCG-TGATCGTGCTGTCGCAGCTCAACCGCTC 21345 ||| ||||||| | |||| ||| | |||| |||| | ||||| ||||||||||| || Sbjct 4339 AAGATGCTGGCCAAGGAG-TTGCAGTGCCCGGTGATTGCCCTGTCCCAGCTCAACCGTTC 4397 Query 21346 CCTGGAGCAGCGGCCGAACAAGCGACCGATGATGTCGGACCTGCGCGAGTCCGGGGCGAT 21405 |||||||||| | ||||||| || |||||||| ||||||||||| || || || || Sbjct 4398 GGTGGAGCAGCGCACCGACAAGCGCCCCATGATGTCCGACCTGCGCGAATCGGGTGCCAT 4457 Query 21406 CGAGCAGGACGCCGATGTGATCATGTTCGTGTACCGCGACGAGGTCTACCACCCGGATAC 21465 ||||||||| ||||| | ||||||||| | |||||||| || |||| || ||| | Sbjct 4458 CGAGCAGGATGCCGACATCATCATGTTCATCTACCGCGATGACTACTACAACAAGGACAG 4517 Query 21466 CCAGTACCGCGGCGTGGCTGAGTTGATCATCGCGAAGCACCGCAACGGC 21514 | || | | | | | || || | ||||||| ||||| || |||||| Sbjct 4518 CAAGGAGCCCAACATCGCCGAAGTCATCATCGGCAAGCAGCGTAACGGC 4566 >seq4487 Length=2993 Score = 141 bits (156), Expect = 3e-29 Identities = 150/197 (76%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 21314 CCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACCG 21373 || ||||||| |||||| |||||||||||||| ||||| ||| | ||||||| ||| Sbjct 440 CCGGTGATCGCGCTGTCACAGCTCAACCGCTCGCTGGAAACGCGTACCGACAAGCGCCCG 381 Query 21374 ATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTC 21433 ||||| | ||||| |||||||| || || |||||||||||||| || ||||| ||||| Sbjct 380 GTGATGGCCGACCTTCGCGAGTCGGGCGCAATCGAGCAGGACGCGGACATGATCGTGTTC 321 Query 21434 GTGTACCGCGACGAGGTCTACCACCCGGATA---CCCAGTACCGCGGCGTGGCTGAGTTG 21490 | ||||||||||| |||| || ||| | | | | || ||| |||| ||| | Sbjct 320 ATCTACCGCGACGACTACTACAACAAGGAAAACTCGCCGGACAAGGGCCTGGCCGAGATC 261 Query 21491 ATCATCGCGAAGCACCG 21507 ||||||| |||||||| Sbjct 260 ATCATCGGCAAGCACCG 244 >seq9150 Length=1571 Score = 132 bits (146), Expect = 2e-26 Identities = 148/197 (75%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 21314 CCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACCG 21373 || || |||| ||||||||||||||||||||| || || ||| | ||||||| ||| Sbjct 454 CCGGTCATCGCGCTGTCGCAGCTCAACCGCTCGCTTGAAACGCGTACCGACAAGCGCCCG 513 Query 21374 ATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTC 21433 ||||| | ||||| ||||| || || || ||||||||||||||||| ||||| | ||| Sbjct 514 GTGATGGCCGACCTTCGCGAATCGGGCGCCATCGAGCAGGACGCCGACATGATCGTCTTC 573 Query 21434 GTGTACCGCGACGAGGTCTACCACCCGGATACC---CAGTACCGCGGCGTGGCTGAGTTG 21490 | ||||||||||| |||| || ||| ||| | | || ||| |||| ||| | Sbjct 574 ATCTACCGCGACGATTACTACAACAAGGAAACCTCGCCGGACAAAGGCCTGGCCGAGATC 633 Query 21491 ATCATCGCGAAGCACCG 21507 ||||||| ||||| || Sbjct 634 ATCATCGGCAAGCAGCG 650 >seq20301 Length=662 Score = 120 bits (132), Expect = 1e-22 Identities = 145/192 (76%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 21268 CGACATGTCCCGCCAG-TGCAAGCTGCTGGCGATGGAGCTTGGTATCCCCGTGATCGTGC 21326 ||| || |||||| | || |||| ||||||| ||| | | || ||| | | || Sbjct 255 CGAAATCTCCCGCTCGCTGAAAGCA-CTGGCGAAAGAGTTGCAGGTGCCGGTGGTGGCGC 313 Query 21327 TGTCGCAGCTCAACCGCTCCCTGGAGCAGCG-GCCGAACAAGCGACCGATGATGTCGGAC 21385 |||||||||| |||||||||||||||||||| |||| ||||||| ||| | | || || Sbjct 314 TGTCGCAGCTTAACCGCTCCCTGGAGCAGCGTGCCG-ACAAGCGTCCGGTCAACTCCGAT 372 Query 21386 CTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGTGTACCGCGAC 21445 ||||| || || || | ||||||||||| ||||| | ||||||||| | || || || Sbjct 373 CTGCGTGAATCGGGCTCCATCGAGCAGGATGCCGACTTAATCATGTTCATCTATCGTGAT 432 Query 21446 GAGGTCTACCAC 21457 |||||||| ||| Sbjct 433 GAGGTCTATCAC 444 >seq24263 Length=519 Score = 107 bits (118), Expect = 6e-19 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 13621 GCTGGTAGATCTCGGAGCGGTGGATGGCGACGTCGTCCGGGGCGGTGATGCCGAGGCGCA 13680 |||||||||| || ||| || | ||| || || | || ||||||||||||| ||||| Sbjct 165 GCTGGTAGATTTCTTCGCGATGCACGGCCACATCCTTGGGCGCGGTGATGCCGATGCGCA 224 Query 13681 CCTGGTCGCCTTGGCTGCTGAGGACCGTGACGGTGATGTTGTCGCCGATATGCAGGGTTT 13740 |||||| ||||| | || || || || || |||| |||||||| |||||||| Sbjct 225 CCTGGTTGCCTTTGACGCCAAGCACGGTCACCGTGACCGAATCGCCGATCATCAGGGTTT 284 Query 13741 CGCCGGGGCGGCGGGTCAAGATCAGCATG 13769 ||||| |||||||||||||||| |||| Sbjct 285 CGCCGACACGGCGGGTCAAGATCAACATG 313 >seq6804 Length=2088 Score = 107 bits (118), Expect = 6e-19 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 3380 CTCCAGCCTGGCGCCCTTCGAGTCCATCCAGCCGGGCAGCAGAGCGATTGCCTGGCAGGT 3439 ||||| || |||||| ||| | | ||||||| |||||| | | || | ||||| Sbjct 1641 CTCCAACCGGGCGCCGCGCGACTGCTTCCAGCCCGGCAGCCGGTGCACGGCATCACAGGT 1582 Query 3440 GAGCAGCTTCTGCAGGTCGAGCCGCAGGTAGTCGGCCCACTCGAAGCCCGGAATCTCGCC 3499 | ||||| | |||| | || |||| |||| ||||||| | || || | || Sbjct 1581 GCACAGCTGCGGCAGCGCCAGACGCATGTAGCCGGCCCAGCTGCCGCACGCTGGCGCGGG 1522 Query 3500 GTGCTCGGCGGGGTTCTCGACCTGGTACCCGAGGCCTCGCAGGCGCGCGGCTTCGGCGTG 3559 || |||||| ||||||||||| |||| || || | ||||| ||||| || || Sbjct 1521 GTTCTCGGCCGGGTTCTCGACGTGGTGGCCCTGGGCCCGCAGCGTGGCGGCGGCGCGGTT 1462 Query 3560 GAACGCGGGGAAGTTGTGTTCGGGCAGGCCAGTCATGGGGCCTGCGAGGTAGATGCGCT 3618 ||| || ||| ||||| |||||||| || | ||| ||||| |||| ||||||||||| Sbjct 1461 GAAGGCCGGGTAGTTGAACTCGGGCAGTCCGGACATCGGGCCGGCGATGTAGATGCGCT 1403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157044095385246