Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_016765.1 Length=54024 Score E Sequences producing significant alignments: (Bits) Value seq1150 210 8e-50 seq34516 113 2e-20 seq2464 109 2e-19 seq20301 100 1e-16 >seq1150 Length=8598 Score = 210 bits (232), Expect = 8e-50 Identities = 330/467 (71%), Gaps = 9/467 (2%) Strand=Plus/Minus Query 3707 ATCACCATCTACGAGCCGATTGGCTACGACTGGTGGACCGGTGAAGGTGTCACGGCAAAA 3766 |||| |||||| || ||| || ||||||| |||| ||| || || ||||| | || Sbjct 2496 ATCAGCATCTATGACGTGATCGGTTACGACTACTGGAGCGGCGAGGGCGTCACCACCAAG 2437 Query 3767 CGCATTGCTGGCGCTCTGCGCTCCATCGGCAACGATGTCGATGTGACCGTGAACATCAAC 3826 || | || | || || ||| | | ||||| | | || ||||| || ||| ||||| Sbjct 2436 CGTGTGGCCGCTGCACTACGCACGCTGGGCAAGGG-GCCG--GTGACGGTCAACGTCAAC 2380 Query 3827 AGCCCCGGCGGCGACGTATTCGAAGGCCTGGCCATTTACAACCTGCTGCGCGAGCACAAG 3886 ||| ||||||||| | ||||| |||||| | || |||||| ||||| |||||| | Sbjct 2379 TCCCCAGGCGGCGACATGTTCGAGGGCCTGTCGATCTACAACACCCTGCGTGAGCACGAC 2320 Query 3887 GGCAAGGTCACGGTGAACATCATCGGCCTGGCTGCCTCTGCCGCCTCTTTCATCGCCATG 3946 ||| |||||||| | || | | |||||||||||||| || || || ||||||||||| Sbjct 2319 GGCGAGGTCACGATCAAGGTGCTGGGCCTGGCTGCCTCGGCGGCTTCCATCATCGCCATG 2260 Query 3947 GCGGGGGATGAAATCCGCATCGGCCGCGCCGCCTTCCTGATGATCCATAACGCCTGGCTG 4006 ||||| || | | |||| || || | |||||| |||||||| ||||| ||| || Sbjct 2259 GCGGGCGACACCGTGCAGATCGCACGGGCGGGCTTCCTCATGATCCACAACGCGTGGGTG 2200 Query 4007 ATCGCCATGGGTAATCGGAATGATCTCCGTGAGATAGCCGATTGGCTGGAGCCATTCGAC 4066 | | | |||||||| | || || || ||||| |||| ||||||||||| |||||| Sbjct 2199 GTGGTCGCCGGTAATCGCATCGACCTGCGCGAGATCTCCGACTGGCTGGAGCCGTTCGAC 2140 Query 4067 ATGACGCTGGCTGACATTTACGCACAGCGC-ACGGAA--ATCGACATCGACGACATCGTG 4123 | |||| ||||| |||| |||| ||| | | ||| | | || || Sbjct 2139 CGCTCCATGGCCGACATCTACGTGGCGCGCTCCGGCATGAGCGAGA---AGGAAGCCGCC 2083 Query 4124 AAACAGATGGACGCCGAGACCTGGATCGGCGGGCGCGAAGCCGTCGA 4170 | ||||||||||||| ||||||||||||| |||| ||| |||| Sbjct 2082 CGCCTGATGGACGCCGAGTCCTGGATCGGCGGCAGCGATGCCATCGA 2036 Score = 116 bits (128), Expect = 1e-21 Identities = 458/710 (65%), Gaps = 29/710 (4%) Strand=Plus/Minus Query 4930 GAGTACGTCCGCGAGACCGGCTTCGTCAACAATGCCGCTCCTGTTTCGGAA-----GGC- 4983 |||| ||| ||||| || |||||| |||||| || || || || | || ||| Sbjct 1116 GAGTTCGTGCGCGAAACGGGCTTCACCAACAACGCTGCCCCCGTGGCTGAGAATCCGGCC 1057 Query 4984 -ACCCAGAAGCCATACTCCGACCTGACCTTCGAACTGGAAAACGCGCCGGTTCGCACCAT 5042 | || |||||| | ||| | || ||||| | || | |||| | || |||||||| Sbjct 1056 GATCC-GAAGCCCGAAAGCGATATCACGTTCGAGCCCGACAGCGCGGCCGTGCGCACCAT 998 Query 5043 CGCACACCTGTTCAAGGC----AAGTCGCCAGATCCTGGACGACGCTTCGGCCTTGCAGA 5098 ||| ||| | || || ||| ||||||||||| || | || ||||| Sbjct 997 CGCCCACTTCATCCGCGCCTCCAAG----CAGATCCTGGAAGATGTGCCGCAGCTGCAGG 942 Query 5099 GCTACATCGATGCGCGCGCTCGT-TACGGCCTGATGCTGGTCGAAGAAGGTCAACTGCTC 5157 |||| |||| | || ||| | |||||||||| | || ||||||| || ||||| Sbjct 941 CCTACGTCGACGGCCG-GCTGCTCTACGGCCTGAAGGTGAAGGAAGAAGCCCAGCTGCTG 883 Query 5158 TACGGGAACGGGACCGGCGC-CAATCTGCACGGCATCATTCCGCAGGCACAGGCCTACGC 5216 |||| | | || || | ||| || ||||||||| | ||||| || || || Sbjct 882 AACGG-ATCTGGCGTGGGTCTCAACCTCAACGGCATCAACACCCAGGCCACTGCGTATGC 824 Query 5217 GCCGCCGAGTGGCGTAGTGGTAACCGCCGAGCAGCGAATCGACCGCATCCGCCTGGCGAT 5276 ||| | | | ||||| || ||| || | |||||| | ||| | || || Sbjct 823 AAACCCGGGCGTCACGGTGGT---CGATGAGACGCCGGTGGACCGCCTGCGCATCGCCAT 767 Query 5277 CCTTCAGGCGCAACTGGCCGAGTTCCCGGCCAGCGGTATCGTGCTCAACCCCATCGACTG 5336 || |||| ||| |||||||||| | | || || |||||||| || ||||||||||| Sbjct 766 GCTGCAGGTGCAGCTGGCCGAGTACGCAGCAGATGGCATCGTGCTGAATCCCATCGACTG 707 Query 5337 GGCGCTGATCGAGCTGACCAAGGACGCCGAGAACCGTTACATCATCGGCAGCCCGCAGAA 5396 ||| |||||| ||| |||||| || | | | ||| | ||| || ||| || Sbjct 706 GGCCGAGATCGAACTGCTCAAGGAAACCACGGGCGGCTACCTGTTCGCCAACCCCCAAGG 647 Query 5397 CGGCACCACTCCGACCCTCTGGCGTCTGCCGGTGGTGGAAACCCAGGCCATCACTCAGGA 5456 || |||| ||| ||| ||| | | |||||||| | ||| ||||||| | | Sbjct 646 CGTGACCAGTCCCGTCCTGTGGGGCCGCCCGGTGGTCGCGACCACGGCCATCGCCACCGG 587 Query 5457 CGAGTTCCTGACCGGTGCGTTCTCTCTCGGCGCCCAGATCTTCGACCGCATGGACATCGA 5516 | | ||||||||||| | ||| | || ||| | || |||||| ||| | | Sbjct 586 CAACTTCCTGACCGGCTCCTTCCGCATGGGTGCCATGGGCTGGGACCGCGAAGACGCCAA 527 Query 5517 GGTTCTGGTTTCCACCGAGAAC---GACAAGGACTTCGAGAACAACATGGTCACCATCCG 5573 | || || | || || |||| |||||| ||| |||||||| || |||| Sbjct 526 CATCGCCGTGAGCAACCAGGACCGTGACA---ACTTCGTGAAGAACATGGTGACGATCCT 470 Query 5574 CGCTGAGGAGCGGCTGGCCTTCGCGGTCTATCGCCCCGAGGCTTTCGTGA 5623 | || ||||| | ||| || | || | |||||||| || ||||||| Sbjct 469 CTGCGAAGAGCGCATCGCCCTCACCGTGTTCCGCCCCGAAGCGTTCGTGA 420 Score = 87.8 bits (96), Expect = 6e-13 Identities = 195/292 (67%), Gaps = 3/292 (1%) Strand=Plus/Minus Query 3122 GAGATTTGCAGATGGTTCGGGGTGCCGCCCTGGATGATCGGCCAGACCGACAAGGG---G 3178 ||||| ||| |||||||| | ||||||||||||||| ||||||| ||| | |||| Sbjct 3099 GAGATCTGCCGATGGTTCCGCGTGCCGCCCTGGATGGTCGGCCACTCCGCCCAGGGCGCC 3040 Query 3179 AGCAACTGGGGGACAGGGCTTGAACAGCAGATGCTCGCGTTCCTGACATTCTCGATCAGC 3238 | || ||||| | ||| | || ||| | ||| ||| |||||||| ||| || | ||| Sbjct 3039 ACGAAGTGGGGCAGCGGGATGGAGCAGGAAATGATCGGCTTCCTGACCTTCACGCTGAGC 2980 Query 3239 TCGATCACCAATCAGATTCAGCAGTGCGTCAACAAGCGGCTGCTAACTGCGCCCGAGCGG 3298 | ||| | ||| ||||| | |||||||| ||||| || || |||| || Sbjct 2979 ACCTGGCTCAAGCGCATTGAGCAGGCCATCAACAAGGATCTGCTCACGCCGGCCGACCGC 2920 Query 3299 ATTCGCTATTACGCCGAGTTCTCACTTGAGGGGTTCCTGAAGGCTGATAGCGCTGGTCGC 3358 | | || |||||| | ||| | || || | ||| |||| ||| | | || Sbjct 2919 ACCAGGTACTACGCCAAATTCAGCGTGGAAGGCCTGCTGCGCTCTGACAGCACGGCCCGG 2860 Query 3359 GCTGCCTGGTACAGCACTATGGCGCAAAACGGTTTCATGACCCGCAACGAAG 3410 || || | ||| | | ||| | | ||| ||||||||||| |||||| Sbjct 2859 GCCGCGTTCTACGGAGCGCTGGTGGACCGCGGGATCATGACCCGCGACGAAG 2808 >seq34516 Length=236 Score = 113 bits (124), Expect = 2e-20 Identities = 79/90 (88%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 38370 GCCTGCTCTTCGCTGATGTCCTGCAGGCGCTCGACGCGAACAGCGGTGATCTCCAGCAGG 38429 ||||||||||||||||| ||||||||| ||||||| || || || ||||| ||||||||| Sbjct 103 GCCTGCTCTTCGCTGATTTCCTGCAGGAGCTCGACCCGCACTGCAGTGATTTCCAGCAGG 44 Query 38430 ATGCGGGAGGCCCAGCGGGGCATGTGGATA 38459 |||||| |||||||| |||||||||||| Sbjct 43 ATGCGGCTAGCCCAGCGCGGCATGTGGATA 14 >seq2464 Length=4980 Score = 109 bits (120), Expect = 2e-19 Identities = 124/164 (76%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 45498 TGAAGCTGTTGGCAAGGGAGATTGGGTGTCCTGTGCTTCCCCTCTGCCAGCTCAACCGAG 45557 ||||| || |||| | |||| | ||| || ||| || |||| | |||||||||||| Sbjct 4337 TGAAGATGCTGGCCAAGGAGTTGCAGTGCCCGGTGATTGCCCTGTCCCAGCTCAACCGTT 4396 Query 45558 -GTTGCGAGTCTCGCCCCGACAAGCGTCCGGTCCTCAGCGACCTGCGCGAGTCCGGCGCC 45616 | || ||| ||| |||||||||| || | | |||||||||||| || || ||| Sbjct 4397 CGGTG-GAGCAGCGCACCGACAAGCGCCCCATGATGTCCGACCTGCGCGAATCGGGTGCC 4455 Query 45617 ATTGAGCAAGACGCCGACATCGTCATGTTCGTGTACCGCGATGA 45660 || ||||| || ||||||||| |||||||| | ||||||||||| Sbjct 4456 ATCGAGCAGGATGCCGACATCATCATGTTCATCTACCGCGATGA 4499 >seq20301 Length=662 Score = 100 bits (110), Expect = 1e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 45573 CCGACAAGCGTCCGGTCCTCAGCGACCTGCGCGAGTCCGGCGCCATTGAGCAAGACGCCG 45632 ||||||||||||||||| | ||| ||||| || || ||| |||| ||||| || |||| Sbjct 347 CCGACAAGCGTCCGGTCAACTCCGATCTGCGTGAATCGGGCTCCATCGAGCAGGATGCCG 406 Query 45633 ACATCGTCATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGACAGGAAGGGTA 45692 || | |||||||| | || || ||||| |||||| | |||||||||| ||| || | Sbjct 407 ACTTAATCATGTTCATCTATCGTGATGAGGTCTATCACGAGAACAGCGACCTGAAAGGCA 466 Query 45693 TCGGCGAAAT 45702 ||| ||||| Sbjct 467 TCGCAGAAAT 476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 172682292878748