Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_016767.1 Length=60714 Score E Sequences producing significant alignments: (Bits) Value seq1466 284 5e-72 seq10062 250 1e-61 >seq1466 Length=7219 Score = 284 bits (314), Expect = 5e-72 Identities = 660/980 (67%), Gaps = 54/980 (6%) Strand=Plus/Plus Query 1406 GCCCAACAGAGCGCAGCGCCGGCTCATCAAGCGGAT---GCACAGCCGCAACATCATCCT 1462 |||||| | |||||| ||| |||||| ||| | |||| |||||||||||||| Sbjct 3138 GCCCAATCGCGCGCAGAAGCGGTTCATCAGCCGGCTCTGGCAC---CGCAACATCATCCT 3194 Query 1463 GAAGGCCCGCCAGCTCGGCTTTACGACGTTCCTATGTATCTTCTTCCTCGACTGCACCCT 1522 |||||| || ||||||||||| || || | | ||| | | || ||| | || Sbjct 3195 GAAGGCGCGGCAGCTCGGCTTCACCACACTGATCGCCATCCTGTGGCTGGACCATGCGCT 3254 Query 1523 GTTCCGGCCGAACGTGCGCGCCGGCATCATCGCCCACGAAGAGGACGCGGCGAAGGCCAT 1582 |||| || | |||| |||||||||||| ||||| || ||||| ||||||| Sbjct 3255 GTTCAATGCGGATCAGCGCTGCGGCATCATCGCGCACGACCGCGAGGCGGCCGAGGCCAT 3314 Query 1583 CTTCCGAGACAAGGTGAAGTTCGCCTACCTCAACCTGCCGGCTCACCTGCGCGAGGTGAT 1642 |||||| ||||||||||| | ||||||| |||||||| | | | ||||| | Sbjct 3315 CTTCCGGGACAAGGTGAAATACGCCTACGAGAACCTGCCCGAGGAGATCCGCGACCGCTT 3374 Query 1643 GCCCCTGAAGCGTGACGCAGCTGAAGAGCTTCTGTTCGCCCACAACAACAGCTCGATCCG 1702 |||||| || || || | || || || |||||||||||||||||| | || Sbjct 3375 CCCCCTGGCACGCGATAGTGCGGTGGAACTGCTTTTCGCCCACAACAACAGCAGCGTGCG 3434 Query 1703 CGTCTCCACGTCGATGCGTTCGGGCACCATGCAGTACCTGCACATTTCCGAGTTCGGGAA 1762 ||| |||| || ||||| ||||||||||| || |||||| | |||||| | || || Sbjct 3435 CGTGGCCACCTCCATGCGCTCGGGCACCATCCACAGGCTGCACGTCTCCGAGCTGGGCAA 3494 Query 1763 GATATGCGCCAAGCGT-CCGGACAGGGCCGAAGAGGT--TGTCCGAGGCTCTATCCCTAC 1819 ||| | || | || | ||| ||| |||| | ||||| || || ||||| ||||| | Sbjct 3495 GATCT-CGGCGCGCTTCCCGCACAAGGCCAAGGAGGTGATGACC--GGCTCCATCCCGGC 3551 Query 1820 CGTTCCCACCCGAGGCGGGATGCTCTTCATTGAGAGCACGGCAGAAGGCCGGGACGGTCA 1879 ||| |||||| | | || || || | || ||||||||||| |||||| |||| | Sbjct 3552 CGTGCCCACC--ACG-GGCATCCTGGTGATCGAGAGCACGGCCGAAGGCGCCAACGGCGA 3608 Query 1880 CTTCTACAAGATGACC------ACGAAGGCCGAACAGCTCGCGCAGCTGGGCCGCAGGCT 1933 |||||| | || || || ||||| || | |||| | | ||| Sbjct 3609 GTTCTACCACCTGTCCCAGCGTGCGGAGGCCCTGCACTACACGCA------CAAGAAGCT 3662 Query 1934 CACCCCCAAGGAGTACCGCTTCCACTTCTTCCCATGGTGGCAGGAGTCGAACTACCGCAT 1993 | || || || ||||||||||||| | |||||||||||| | ||||||||||| Sbjct 3663 GAGTCCGCGCGACTATCGCTTCCACTTCTATGCCTGGTGGCAGGAGCCCAACTACCGCAT 3722 Query 1994 GGACCCGGAAGGCGTGGTC---ATCA-GC-CGGGCAGACCATGAGTATTTCGACAAGGTA 2048 |||| || || ||||| ||| || || |||| || || ||||||||| |||| Sbjct 3723 GGACGCG---GGTCTGGTCCATGTCACGCGCGAGCAG--CACGACTATTTCGACCAGGTC 3777 Query 2049 GAGGGCATCATGGGATGCTCGATCGACATCGAGCAGCGCGCATGGTGGATAGCGACCCGC 2108 |||| | ||| || | ||||| | |||||||| || |||| | || |||| Sbjct 3778 GAGGTCGAGATGCAGAGCACCATCGATCTGGAGCAGCGGGCCTGGTATGTGGCCACCCAG 3837 Query 2109 GACAACGACTTCTCCGGAGAGGAAGAGTCGATGTGGCAGGAGTACCCATCCACACCGGCC 2168 || |||||| |||| | | ||| ||||||||||||||||| ||||| || ||| Sbjct 3838 GAAGCGGACTTCCCCGGCGCGCCTGAGCGCATGTGGCAGGAGTACCCCTCCACGCCTGCC 3897 Query 2169 GAAGCCTTTCAGGTGTCCAATAAGGGCTGCTACTATGCGGTCCAGATGGCGAAGGT-GCG 2227 || || || || ||| | |||| | ||||| || | ||| | ||| ||| Sbjct 3898 GAGGCATTCCAACAGTCGAGCGCGGGCCGGTACTACGC------CAAGGCCATGGTCGCG 3951 Query 2228 CAAAGAGAAGCGC------CTCACGCGGGTACCGTTCGAGCCGGGCTATCCGGTTAACAC 2281 | | ||||||| |||| ||| || |||| || ||||| |||| Sbjct 3952 CTCA-CGAAGCGCGGCGGTATCACCTCGGTGCC---AGAGCTGGATCTGCCGGTCTACAC 4007 Query 2282 CTTCTGGGACATCGGGGCAGGCGACGGCACGGCCATCTGGTTCCACCAGCAGGTTGGCGT 2341 ||||||||| |||||| | ||||| ||||||||||||||| ||| | ||| Sbjct 4008 CTTCTGGGATATCGGGCGCGCGGACGGGACGGCCATCTGGTTCATGCAGTCCCTGCGCGG 4067 Query 2342 GCAGCATCGCTTCATCAACT 2361 || ||||||||||||||| Sbjct 4068 CGAGGATCGCTTCATCAACT 4087 >seq10062 Length=1426 Score = 250 bits (276), Expect = 1e-61 Identities = 568/840 (68%), Gaps = 46/840 (5%) Strand=Plus/Minus Query 8396 AGACCGATCTGGAGTCCGACGCCGGCGACCGCATCTCCTTCGACCTGTCCGTGCAGCTGC 8455 ||||||| ||||| || ||||||||| |||| || |||||||| || |||||| Sbjct 996 AGACCGACCTGGAACAGGAAGCCGGCGACACCATCAGCTATGACCTGTCGGTCCAGCTGG 937 Query 8456 GCGGCAAGCCTACAGCCGGCGATGACC-GTCTGAAAGGCAAGGA--AGAAGCCCTGAAGT 8512 ||||| ||| | | ||||| | | | | ||| ||||||| |||||| || | | Sbjct 936 GCGGCGAGCTGATCGAGGGCGACGCCAAGGCCGAA-GGCAAGGGCGAGAAGC--TGGACT 880 Query 8513 TCTTCACCGACGAAGTAATCATCGACCAGCTGCGTAAATCCGTTTCCGCAGGCGGTAAGA 8572 ||||||| ||| | || ||||||||||| ||||| |||| | || || | Sbjct 879 TCTTCACGGACAAGGTCTTCATCGACCAGGCCCGTAAGCCCGTCAGCTGCGGTGGCCGCA 820 Query 8573 TGACCCGCAAGCGCACCGCGCATGACCTGCGTAAGGTGGCAAAGGATCGTCTGTCCGACT 8632 || ||||||||||||||| ||| |||||||| ||||| | | || ||| | || | Sbjct 819 TGTCCCGCAAGCGCACCGTGCACGACCTGCGCAAGGTCGGCCGCAACCGCCTGACGGAAT 760 Query 8633 ACTGGGCGCA---GTACATTGACGAGCTGAAGTTCGTCTACATGTCTGGCCTGCGTGGTA 8689 ||||||||| |||| |||||| || ||| | ||| | ||| |||||| | Sbjct 759 ACTGGGCGCGCGTGTAC---GACGAGTTGTTCTTCATGTACGCCGCCGGCGCGCGTGGCA 703 Query 8690 CCAATGAAGATTTCATTGAGGACTTC------GACTATGCCGGCCACGCGGGCAACCCGC 8743 ||| || |||| ||||| || || || |||| ||| |||| | | Sbjct 702 TCAACCCGGACTTCA------ACTTCCCGCTGGATTACGCGGGCCGCGCCAACAACGC-C 650 Query 8744 TACGCCA-GCCTGATGCACAACACCTCCTGTTCGGTGGTGCGGCCAACTCGAAGGCGTCA 8802 | || ||| ||||| | ||| |||||||||| | | ||| | ||||| | Sbjct 649 TTCGAGGCGCCCGATGCCGAGCACATCCTGTTCGGCGACGGCACCAGC---AAGGCCACG 593 Query 8803 CTGACTGCCGACGACAAGATGAGCCGCGTCACC---ATCGAACGCGCCACCACCAAAGCC 8859 ||||| || | ||||||| |||| ||| ||||| ||||||| ||| || ||| Sbjct 592 CTGACCAGCGCGGGCAAGATGT--CGCG-CACGCTGATCGAGCGCGCCAACACGAAGGCC 536 Query 8860 ----CGTATGATGCGTGCTCGCGATCCTAAGACCGCGAACCTGCTGCCGGTCTCCGTGGG 8915 || | | ||| ||| | | |||||||| | |||| | || || | | Sbjct 535 GCGGCGCAGG--GCGGCGGCGCCA--CGAAGACCGCCGAGCTGCAGGGCATCACCATCGC 480 Query 8916 CGGCGAGAAGCACTACGTCGTGCTGATGTCTCCGTATCAGGAGTACGATCTGCGCAACGA 8975 |||| |||||| ||| ||||| |||| |||| | |||| |||||| | | Sbjct 479 CGGCAGCGAGCACTTCGTGACCGTGATGCACCCGTTCCAGGCGCACGACCTGCGCGTCCA 420 Query 8976 AGTGGGCGAGCGTGGCTGGCTGGAAGTGCAGAAGGCGGCCGCAGCTGCTGAAGGCAAGAA 9035 ||||||| | |||||||||| | ||||||||||| || || || ||||| | | Sbjct 419 GACGGGCGAGGGCAGCTGGCTGGACATCCAGAAGGCGGCGGCCGCGGCGGAAGGTCGGGA 360 Query 9036 CAACCCGATCTTTAAGGGCGGGCTGGGCATGATTAACAACGCCGTGCTGCACTCGCACGA 9095 |||||||||||| |||| | ||||||||||| |||| | | |||||| |||| | Sbjct 359 CAACCCGATCTTCAAGGACAACCTGGGCATGATCGGCAACACGATCCTGCACAAGCACAA 300 Query 9096 GTCCGTCATCCGTATGAACGACTACGGTGCCGGCCAGAACGTGCAGGCAGCTCGCGCGCT 9155 ||||||| | || | ||||||||||| |||||| ||||||| || || || ||||| Sbjct 299 GTCCGTCGTGCGGTTCAACGACTACGGCGCCGGCGGCAACGTGCCCGCCGCGCGTGCGCT 240 Query 9156 GTTCCTCGGCCGTCAGGCAGCTGTCATCGCCTACGGTACCGCCGGT---GGCCTTCGCTT 9212 |||||| ||||||||||| ||| | |||| |||| ||| ||| ||||| ||||| Sbjct 239 GTTCCTGGGCCGTCAGGCCCTGGTCCTGGCCTTCGGTTCCGGTGGTAGCGGCCTGCGCTT 180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194081258154168