Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1997 154 2e-32 seq195 140 4e-28 >seq1997 Length=5797 Score = 154 bits (170), Expect = 2e-32 Identities = 587/908 (65%), Gaps = 30/908 (3%) Strand=Plus/Plus Query 36867 CTATTCATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTT 36926 || || | |||||| ||| ||||||||| ||||| | ||||||| |||||||| || Sbjct 1807 CTGTTTAAAACTCCAGCTTTCTGATATTCTGAAACTCTTTTTTCGAAGAAATTTGTTTTA 1866 Query 36927 CCTTCTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTA 36986 || | || || || | |||||||||||||| ||||| | | ||||| | | | Sbjct 1867 CCCTGTAAAGAGATCATATCCATAAAATCAAACGGATTCGCAGAGTTATACACTCTTGCA 1926 Query 36987 CATGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCA 37046 ||| |||||| | | || || | |||||||||| ||||| ||||| | Sbjct 1927 CATCCTAATTCTACTAATAATCTGTCGGTTACAAATTCTAAGTATTGTGTCATTAAGTTT 1986 Query 37047 TAGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATT 37106 ||| || ||||||| | || |||| | ||| | |||| | |||| || Sbjct 1987 GCGTTCATTCCAATTAAGCTCACCGGAAGAGATTCTGTTATAAATTCTCTTTCAATATCA 2046 Query 37107 ACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATAT--- 37163 | ||| || || | ||| | ||| |||| || | | | |||| | Sbjct 2047 AGAGC--CTGTACCAGGATTT-CTGTAA-TTCTGGCTTTTGAAACTTTATTAACGAGGTG 2102 Query 37164 ----TTAAACAATAAACA-TGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATT 37218 || ||| | || ||||||||||||||||| |||||||| | ||||||| Sbjct 2103 GTGGTTGTGCAA-ATGCACTGCAAAATCACAATGTACGCCTTCATCACGTGAAATCAATT 2161 Query 37219 CATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAA 37278 |||| ||||| || | || ||||| || || | |||||| | |||| | || | | Sbjct 2162 CATTTGAAAAAGTAAGACCCGGCATCAATCCACGTTTTTTCAACCAATAGATAGAACAGA 2221 Query 37279 AAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAG 37338 | | ||| || || || || ||||| || |||||||| || | || | | | | || Sbjct 2222 ATGCTCCTGAGAAAAAGATTCCTTCTACGGCTGCAAAAGCAATCAGTCTTTCAGCAAA-- 2279 Query 37339 TTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAA 37398 |||| | ||| ||||||||| | ||| || || ||| |||| || Sbjct 2280 -TGAATCGGATTCA---ATCCATTTTAAAGCCCAGTCCGCTTTTTTCTTAATTGCCGGAA 2335 Query 37399 TTGTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAA 37458 | ||| | || | || || || |||||| | |||| ||| ||| ||||||| Sbjct 2336 ATACTTCCAAAGCGTGGAAAAGCTGGTCCTTTTCTGCTTCATCTTTTACATACGTATCAA 2395 Query 37459 TTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAAC 37518 | || | | ||| |||| ||| ||||| || || || || || || || ||| Sbjct 2396 TCAGAAGAGAATAGGTTTCGCTGTGGATATTCTCCATCATGATTTGGAATCCGTAGAAAA 2455 Query 37519 ACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTA 37578 | ||||||| | ||||||| ||||| | ||| ||| || | ||||||||| || | Sbjct 2456 ATTTAGCTTCCGGATATTGAACTTCGTTTACAAAATTCTCTGCCAGGTTTTCATTCACAA 2515 Query 37579 TCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATT-- 37636 | || || || ||||| ||||| | || || ||| ||||||| | | |||||||| Sbjct 2516 TACCGTCTGATGCAGCAAAAAAAGCTAAAATATGTTTGATAAAATATTTCTCATCATTAT 2575 Query 37637 TGATAATTTT-TTCCAATCATTAATATCTTTTGAT--AAATCAACTTCATCAACGGTCCA 37693 | | | || ||||| || | ||| | || | ||||||| ||| || | ||||| Sbjct 2576 TCAGCTTATTGTTCCAGTC--TGATAAATCCTGGTGCAAATCAATTTCTTCGGCAGTCCA 2633 Query 37694 AAAACTTGC--CAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAAT 37751 ||||||||| | || | |||||| | ||||||||||| |||| ||| || || Sbjct 2634 AAAACTTGCTTCCATTTTC--TTATACCACTCCCAAATATCATGGTGTTTTATAGGGAAA 2691 Query 37752 ATTACAAA 37759 || || || Sbjct 2692 ATCACGAA 2699 >seq195 Length=24554 Score = 140 bits (154), Expect = 4e-28 Identities = 386/588 (66%), Gaps = 8/588 (1%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| || ||| | ||| ||||| | ||| || | ||||| |||||| | | Sbjct 23291 CAGGCAAAGTCGGTATGCATACCCTCATCACGACTGATAAGCTCATTCGAAAAGCTGAGA 23232 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAAGAA 37294 || ||||| | ||| | ||| || | ||| || || | ||| ||| | ||||| ||||| Sbjct 23231 CCAGGCATGAGACCACGTTTCTTCAGCCAGAAGATGGA-GCAGAAGGAGCCAGAGAAGAA 23173 Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA---ACTATAATC 37351 ||||| || |||| || || || | |||||| || | | || || || Sbjct 23172 GATACCCTCCACTGAGGCGAACGCAAGAAGACGCTCTGCGTATGACGACACACGCGGGTC 23113 Query 37352 AGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGC 37411 | | ||| || || |||| | || || || ||||| || || ||||| || Sbjct 23112 ACA---CCACTTGAGTGCCCAAGCGGCTTTCTTCTTCACACACGGGATAGTGTCAATGGC 23056 Query 37412 TTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATA 37471 | | || || || ||| || || | || || || ||||| |||| ||| Sbjct 23055 ACGCAGCAAAAGGTCCTTCTCTACAGCGTCCTTGATGTACGTGTCAATGAGTAGCGAATA 22996 Query 37472 CATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGA 37531 | || |||||||| || || ||||| ||||||||||| || ||||||| |||||| | Sbjct 22995 GACCTCCGAGTGAATGTTCTCGATAGCAATCTGAAAACCGTAGAAACACCGAGCTTCGGG 22936 Query 37532 TAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGC 37591 | || || ||||| || || | || | ||||||||| || || |||||||| || Sbjct 22935 AACCTGCACTTCGTTGCTGAAGTTCATGGCCAGGTTTTCATTCACAATGCCATCACTGGC 22876 Query 37592 TGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCA 37651 ||||||||| || || |||| || ||||| || | || | | | | |||||||| Sbjct 22875 TGCAAAGAAGGCGAGCACATGCTTGATAAAGTGACGCTCGTTGTCAGTGAGGTTTTTCCA 22816 Query 37652 ATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACG 37711 ||| ||||| || | | ||| | || ||| | |||||||| ||| || Sbjct 22815 ATCTTTAATGTCGTGCACCAGATCCAGCTCCTCAGCCGTCCAAAACGAGGCCTCAGCTTT 22756 Query 37712 TTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759 || |||||| ||| | |||||| | || || || || | |||||| Sbjct 22755 CTTGTACATCTGCCAGACATCATTCTCCTGAATCGGGAAGAGTACAAA 22708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592053670665560