Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq10726 107 2e-18 seq6884 93.3 3e-14 seq776 93.3 3e-14 >seq10726 Length=1340 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 29829 GTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 29888 ||| ||||| ||||| || || || || || ||| | || |||||| | || |||| Sbjct 552 GTGCGCGTCACCCAGCGTATGCACGAAGTCGCCCACGCCCAGGCCGGTGGCCTGCGCCAC 493 Query 29889 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCC 29948 ||||| || || || | ||||||||||||||| || || || ||||| ||||| || Sbjct 492 CATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCGAGGAAGATGTCGCC 433 Query 29949 CGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGT 30008 | |||||||||||| || ||||| ||||| |||||| ||||| ||| | | Sbjct 432 GCTGCGCTGGTAGAGCTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTGGAACAGGTT 373 Query 30009 GTGGCACGG 30017 ||||||||| Sbjct 372 GTGGCACGG 364 >seq6884 Length=2068 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 29829 GTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 29888 ||| ||||| ||||| ||||| || || || || | || || || | || |||| Sbjct 1742 GTGCGCGTCGCCCAGCGTGTGCACGAAATCGCCGACGCCGAGACCCGTCGCCTGCGCCAC 1683 Query 29889 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCC 29948 ||||| ||| || || | ||||||||||||||| || || || ||||| ||||| || Sbjct 1682 CATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCGAGGAAGATGTCGCC 1623 Query 29949 CGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGT 30008 | ||| |||||||| || ||||| |||||| |||||| ||||| ||| | Sbjct 1622 GCTGCGCTGATAGAGCTGGCAGCTGAGCTTGCCGTCGACCACGTAGAACTGGAACAGCGA 1563 Query 30009 GTGGCACGG 30017 |||||||| Sbjct 1562 ATGGCACGG 1554 >seq776 Length=11329 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 29881 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 29940 || |||| ||||| || || || | ||||||||||||||| ||||| || || || Sbjct 10630 TGGGCCAGCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAAGGGAACGCCCAGGAAG 10571 Query 29941 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 30000 |||||| | | |||||| ||||| || ||||| |||||| |||||| ||||| Sbjct 10570 ATGTCCGCGCTGCGCTGGTATAGCTGGCAGCTGAGCTTGCCGTCGGCCACGTAGAACTGG 10511 Query 30001 CACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30060 | | || |||||| || || ||||| | || ||| ||||||||||| Sbjct 10510 AAGAAGGCGTGGCAGGGCATGAGCGCCATCTGCGGCAGGTCGGCCACGTTCCAGGCGCTG 10451 Query 30061 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA 30094 ||||||||||| | | || |||||| || ||| Sbjct 10450 ACGATGATGCGGCGGCTGTCCGGGTTGCTCTTGA 10417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408440614820447