Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq10852 215 9e-51 seq4075 178 2e-39 seq496 158 2e-33 seq15511 132 9e-26 seq5213 131 3e-25 >seq10852 Length=1322 Score = 215 bits (238), Expect = 9e-51 Identities = 303/418 (72%), Gaps = 17/418 (4%) Strand=Plus/Plus Query 22959 GTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAAC--CTTCG 23016 ||| || ||||||||| | || || || | | |||||| ||||| |||||| ||||| Sbjct 307 GTACGACACTTCGCACGCCTCGTCCGACTGCAGGAACAGCATTTG--CGCAACGCCTTCG 364 Query 23017 CCAGCGTAGATCAGTGCCGG--GCTTGGTGTGGTATTGGAAAACTCCAGAGTAAGCGAGC 23074 ||||||||| |||||| | || |||||| ||||| |||||||| || | || Sbjct 365 TTGGCGTAGATCTTTGCCGGCAGGTT--TGTGGTGTTGGAGAACTCCAGTGTCACGTGGC 422 Query 23075 CTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGTCG 23134 ||| ||| || |||||||||||||||||||| |||||||||||||| |||||||| || Sbjct 423 CTTCCCACTCCGGTTCCAGCGGCGTGACGTTGACGATGATGCCGCAGCGCGCATAGGTGC 482 Query 23135 ATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTTTG 23194 ||||| |||||||| || || |||||||||||| |||| ||| || | Sbjct 483 TCTTGCCCAGGCAGATGGTCAAAACATCACGCGGAATGCGGAAGAATTCGACGGTACGCG 542 Query 23195 CCAGTGCGAAACTGTTCGGCGGAATGATCAGGCCTTGGCCGTTTGGAACGTGCTTCGTAA 23254 |||| || || ||| ||||| ||||| | | | || | | || || ||| | Sbjct 543 CCAGCGCAAAGGAGTTTGGCGGGATGATGCAGACATCGC--TCTTGA---TG--TCG--A 593 Query 23255 CGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTATTCAGGTTGGTGAAAA 23314 |||| | | |||| ||||||||| || ||||| | || || | |||||||| | Sbjct 594 CGAAGCTTTTTTCGTCGAAATTCTTCGGGTCGACGATGGCCGAATGAATATTGGTGAAGA 653 Query 23315 CCTTGAATTCGTTACCGCAACGAATATCGTAGCCGTAGCTGGAAACACCGTAGGGAAT 23372 |||||||||| | | ||||| | |||||||||||||||||||| ||||||| ||| Sbjct 654 CCTTGAATTCATCGGCACAACGTACGTCGTAGCCGTAGCTGGAAACCCCGTAGGAAAT 711 >seq4075 Length=3255 Score = 178 bits (196), Expect = 2e-39 Identities = 262/369 (71%), Gaps = 9/369 (2%) Strand=Plus/Minus Query 22987 TCAAAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTG 23046 || |||||||| | || ||||| || ||||| |||||||| | || || || ||| Sbjct 2882 TCGAAGAACAGCACCTGGGCGCAGCCCTCGCCGGCGTAGATGCGGGCGGGCAGCGGCGTG 2823 Query 23047 GTATTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTT 23106 || ||||| |||||||| || | |||||| |||||| || || | ||||||||||| Sbjct 2822 GTGTTGGAGAACTCCAGCGTCACATAGCCTTCCCATTCGGGCTCGAAGGGCGTGACGTTG 2763 Query 23107 ACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGC 23166 |||||||||||||| ||||| || || |||||| |||||||| | |||| ||| Sbjct 2762 ACGATGATGCCGCAGCGCGCGTAGGTGCTTTTGCCCAGGCAGATGGTCAGCACGTTGCGC 2703 Query 23167 GGAATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGATCAGG 23226 || ||| ||||| || |||| ||||| ||||| ||||| ||||| ||||| | Sbjct 2702 GGGATGCGGAAGTACTCGACCGTGCGCGCCAGCGCGAAGCTGTTGGGCGGGATGATGCAG 2643 Query 23227 CCTTGGCCGTTTGGAACGTGCTTCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCG 23286 | | ||| | ||| ||| ||||| | | ||| ||| ||||| || || Sbjct 2642 CTGTCGCC--CTCGAA-----ATCG--ACGAAGCTCTTTTCATCGAAGTTCTTGGGGTCC 2592 Query 23287 ACAACCGCGTTATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAG 23346 || || | | | | | ||||||||| |||||||||||| |||| || || |||||| Sbjct 2591 ACCACGGTGCTGTGGATGTTGGTGAACACCTTGAATTCGGGTGCGCAGCGGATGTCGTAG 2532 Query 23347 CCGTAGCTG 23355 || |||||| Sbjct 2531 CCATAGCTG 2523 >seq496 Length=15366 Score = 158 bits (174), Expect = 2e-33 Identities = 287/418 (69%), Gaps = 9/418 (2%) Strand=Plus/Minus Query 22938 GTATTTCCCTTTGCGGTCGGCGTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAG 22997 ||||||||| ||||| |||| || ||||| | || || || |||||||| Sbjct 9238 GTATTTCCCGCCACGGTCCTTGTAGCTGACATCGCAGACCTCGTCGCTCTCGAAGAACAG 9179 Query 22998 AATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTATTGGAAAA 23057 | || ||||| || || || || ||||| |||| || || ||||| ||| || Sbjct 9178 CACCTGCGCGCAGCCCTCTCCCGCATAGATGCGTGCAGGCAGCGGGGTGGTGTTGCTGAA 9119 Query 23058 CTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCC 23117 || || || | |||||| |||||| || || | ||||||||||| ||||||||||| Sbjct 9118 TTCGAGCGTGACGTAGCCTTCCCATTCCGGCTCGAAAGGCGTGACGTTCACGATGATGCC 9059 Query 23118 GCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAA 23177 ||| ||||| || || ||||| ||||| || | |||| || || ||| ||| Sbjct 9058 GCAGCGCGCGTAGGTACTCTTGCCCAGGCAAATGGTCAGCACGTTGCGGGGGATGCGGAA 8999 Query 23178 GTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGATCAGGCCTTGGCCGTT 23237 || ||| |||| ||||||||||| ||||| ||||||||||| || | ||| Sbjct 8998 GTACTCCACCGTGCGCGCCAGTGCGAAGCTGTTGGGCGGAATGATGCAGCTGTCGCC--C 8941 Query 23238 TGGAACGTGCTTCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTT 23297 | ||| ||| || ||| | | ||| ||| ||||| || || || |||| | | Sbjct 8940 TCGAA-----GTCG--ACAAAACTCTTTTCATCGAAGTTCTTCGGGTCTACCACCGTGCT 8888 Query 23298 ATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAGCCGTAGCTG 23355 | | ||||||||| ||||||||||| | || || || ||||||||||||||| Sbjct 8887 GTGGATGTTGGTGAAGACCTTGAATTCCGGCGCACAGCGGATGTCGTAGCCGTAGCTG 8830 >seq15511 Length=909 Score = 132 bits (146), Expect = 9e-26 Identities = 256/371 (69%), Gaps = 15/371 (4%) Strand=Plus/Plus Query 22990 AAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTA 23049 |||||||| || || || || ||| |||||||| | ||||| || ||||| Sbjct 346 AAGAACAGCATCTGCGCCACGCCCTCGTTGGCGTAGATGCGCGCCGGCAGCGGCGTGGTG 405 Query 23050 TTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACG 23109 ||| |||||||| || | ||| | |||||| || |||||||| |||||||| ||| Sbjct 406 TTGCTGAACTCCAGCGTCACATGGCCCTCCCATTCCGGCTCCAGCGGGGTGACGTTGACG 465 Query 23110 ATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGA 23169 ||||||||||| |||||||| || ||||| ||||||| || | || ||||| Sbjct 466 ATGATGCCGCAGCGCGCATAGGTGCTCTTGCCCAGGCAGACCACCAGCGTATCGCGCGGG 525 Query 23170 ATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT-CAGGCC 23228 || |||| ||| |||| ||||| ||||| ||||||||||| ||||| || | Sbjct 526 ATACGGAAGAACTCCACCGTGCGCGCCAGCGCGAAGCTGTTCGGCGGGATGATGCACTCG 585 Query 23229 TTGGCCGTTTGGAACGTGCTTCGTAACGAAATTGTCTTCGG--TGAAATTCTTTGGATCG 23286 | |||| | || || || ||||| ||||||| ||| | ||| || ||| Sbjct 586 TCGGCC---TCGA---TG--TC--CACGAA--GCTCTTCGGATCGAAGTGCTTGGGGTCG 633 Query 23287 ACAACCGCGTTATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAG 23346 || | | | || | ||||||||| |||||||| ||| ||| || | |||||| Sbjct 634 ACGATGGTGGAGTTGATGTTGGTGAACACCTTGAACTCGCGCGAGCAGCGCACGTCGTAG 693 Query 23347 CCGTAGCTGGA 23357 || |||||||| Sbjct 694 CCATAGCTGGA 704 >seq5213 Length=2642 Score = 131 bits (144), Expect = 3e-25 Identities = 253/369 (69%), Gaps = 11/369 (3%) Strand=Plus/Minus Query 22990 AAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTA 23049 |||||||| || || || |||||| |||||||| | ||||| || ||||| Sbjct 849 AAGAACAGCATCTGCGCCACGCCTTCGTTGGCGTAGATGCGCGCCGGCAGCGGCGTGGTG 790 Query 23050 TTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACG 23109 ||| || ||||| || | ||||| |||||| || |||||||| || ||||| ||| Sbjct 789 TTGCTGAATTCCAGGGTGACGTGGCCTTCCCATTCCGGCTCCAGCGGGGTCACGTTGACG 730 Query 23110 ATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGA 23169 ||||||||||| ||||| || || ||||| ||||| | || | || ||||| Sbjct 729 ATGATGCCGCAGCGCGCGTAGGTGCTCTTGCCCAGGCACACCACCAGGGTATCGCGCGGG 670 Query 23170 ATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT-CAGGCC 23228 ||| ||||| ||| |||| ||||| ||||| ||||||||||| ||||| || | Sbjct 669 ATGCGGAAGTACTCCACCGTGCGCGCCAGCGCGAAGCTGTTCGGCGGGATGATGCACTCG 610 Query 23229 TTGGCCGTTTGGAACGTGCTTCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGAC 23288 | ||| || || || ||| ||||| | | | ||| | ||| || ||||| Sbjct 609 TCGGCGGT---GA---TG--TCG--ACGAAGCTTCCCGAGTCGAAGTGCTTGGGGTCGAC 560 Query 23289 AACCGCGTTATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAGCC 23348 | || || | ||||||||| |||||||| ||| ||| || | |||||||| Sbjct 559 GATCGTCGAGTTGATGTTGGTGAACACCTTGAACTCGCGCGAGCAGCGCACGTCGTAGCC 500 Query 23349 GTAGCTGGA 23357 |||||||| Sbjct 499 ATAGCTGGA 491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897194855263120