Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq23830 105 2e-18 seq23194 89.7 2e-13 >seq23830 Length=533 Score = 105 bits (116), Expect = 2e-18 Identities = 175/253 (69%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 26016 CCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTC 26075 |||||||||||| ||| || || | || ||||| || || || |||||||| Sbjct 442 CCACTTGCGGGTGCGCAGGCTGCCTTCCACATAGACCTGGGAGCCCTTGCGCAGGTACTG 383 Query 26076 GCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTT 26135 |||| ||||||| || | ||| | ||||| ||| ||||| || || |||| || Sbjct 382 GCCCACGATCTCGGCCAGACGGCCGTTGAACACGATGCGGTGCCACTCGGTGGCTTCCTT 323 Query 26136 CTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGAC 26195 || |||||||| | ||| ||| ||||| || | ||| || | ||| | ||||||||| Sbjct 322 GTTCTCGCCGGTGTTCTTGTCGCGCCAGCGGTCGGTGGTGGCGATGGTGACGTTGGCGAC 263 Query 26196 TGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGAT 26255 | |||| | || | | || ||||| || ||| ||| ||||| ||||| | ||| Sbjct 262 CTGGTCGCCGCTGGGGAAGGTGCGCATCTCGGGGTCGCGCCCGAGGTTGCCGACGATGAT 203 Query 26256 TACTTTATTTACG 26268 ||||| || ||| Sbjct 202 GACTTTGTTGACG 190 >seq23194 Length=554 Score = 89.7 bits (98), Expect = 2e-13 Identities = 149/211 (71%), Gaps = 11/211 (5%) Strand=Plus/Plus Query 26067 CAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGT 26126 |||||||||||| |||||||| | | |||||| || | ||| ||||| |||||||| || Sbjct 126 CAGGTACTCGCCGGCGATCTCGCCGAGCTTGCCGAAGAACACCACGCGGTGCCATTCGGT 185 Query 26127 CACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCT-GAGGTCGCTACGGTAA 26185 ||| | || | |||| | ||| || |||| || || | ||| || | | | | Sbjct 186 GCGTTCCTGCTGGTTGCCG---TCCTTGTCCTTCC-GCACGCTGGTGGTGGCCAGGCTGA 241 Query 26186 TGTTGGCGACTGC---GCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGT 26242 | || || || |||||| | || | |||||| | ||||| ||||| || |||| Sbjct 242 TCCGGGTGATCGCCATGCCGCCCT---GCGTATAACGGGTTTCTGGGTCGTTGCCGAGGT 298 Query 26243 TACCGACAAGGATTACTTTATTTACGCCGCG 26273 | ||||| ||||| ||||| || | |||||| Sbjct 299 TGCCGACCAGGATGACTTTGTTGATGCCGCG 329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159750152877474