Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_017984.1 Length=46387 Score E Sequences producing significant alignments: (Bits) Value seq9534 111 5e-20 >seq9534 Length=1511 Score = 111 bits (122), Expect = 5e-20 Identities = 201/288 (70%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 31912 AATTTCTACTTTTGAAGGAACTAGATTAACTGCATATGATGATGGTGTTGGCGTGTGGAC 31971 ||| | || ||||||||| | | | | ||| |||||||| ||| |||||| ||||| Sbjct 1161 AATCTGTAATTTTGAAGGGTTAAAACTTAGTGCTTATGATGACGGTACTGGCGTCTGGAC 1220 Query 31972 TATCGGCATA-GGTACAACCATCTACCCAAATGGTACAAAAGT-TAAGA-AAGGCGATAC 32028 ||| || ||| || || || ||||| ||||||| | || |||| |||| ||| Sbjct 1221 TATTGG-ATATGGCACGACGCGATACCCTAATGGTA--AGCGTGTAAGTGAAGGAGATCG 1277 Query 32029 ATGTACATCTGAACAAGCAAAAACCTACTTCAAACATGATTTAGTTAAGTTTGAAAATGT 32088 ||| | ||| || || ||||| || | | ||||||||| | ||||| || Sbjct 1278 ATGCTCTCTTGAGCAGGCTAAAACTTATATGCAGCATGATTTAAAGATATTTGAGCGTGC 1337 Query 32089 TGTAAATGAATCCGTTAAAGTTCCACTTAGTCAGAATCAATTTGATGCTCTAGTGTCACT 32148 |||||| || || ||||| || | | ||||||||||| ||||| ||||| || || Sbjct 1338 AGTAAATAGTTCTGTAAAAGTGCCTTTAAAACAGAATCAATTCGATGCACTAGTCTCTCT 1397 Query 32149 GACCTACAACATCGGCTCAGGTGCTTTTAAAAATTCAACTTTACTCAA 32196 | || ||||| || |||||| |||||| |||| || |||||||| Sbjct 1398 AGCTTATAACATTGGGGTAGGTGCCTTTAAACATTCGACCTTACTCAA 1445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148254206509782