Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_018087.3 Length=166687 Score E Sequences producing significant alignments: (Bits) Value seq9534 113 5e-20 seq11171 109 6e-19 seq8146 91.5 2e-13 seq1881 91.5 2e-13 seq31058 87.8 2e-12 seq15025 87.8 2e-12 >seq9534 Length=1511 Score = 113 bits (124), Expect = 5e-20 Identities = 196/285 (69%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 11067 CCATACTTCAAATTGTTCTGCTGCGCCTTTATAATCGCCAGCATTCAATTTTCTCAATAA 11126 |||||| ||||| || | |||||| || | ||||| || | ||| || ||| | | ||| Sbjct 1497 CCATACATCAAACTGGTTTGCTGCTTCTGTGTAATCACCTGAATTTAACTTTTTGAGTAA 1438 Query 11127 AGTTGAATTCGCAAATGCCGTTTCGCCAATATTGTACATTAATGAAACTAAAGCATCAAA 11186 || |||| ||| || | | ||||| || || || || |||| ||||| || Sbjct 1437 GGTCGAATGTTTAAAGGCACCTACCCCAATGTTATAAGCTAGAGAGACTAGTGCATCGAA 1378 Query 11187 TTGATTTTGATTTAATGGTACAGTAACTAACTTATTAACAGCAGATACAAATACTTTTAA 11246 |||||| || ||||| || || | || | |||| || ||| |||||| ||||| Sbjct 1377 TTGATTCTGTTTTAAAGGCACTTTTACAGAACTATTTACTGCACGCTCAAATATCTTTAA 1318 Query 11247 ATCATTTTTCATATACATTTTAGCCTGGGCTTCGGTGCATACATCGCCTTTGGTAACACG 11306 ||||| | |||||| |||||||||| | | |||| ||| |||| | ||||| Sbjct 1317 ATCATGCTGCATATAAGTTTTAGCCTGCTCAAGAGAGCATCGATCTCCTTCACTTACACG 1258 Query 11307 TTTACCACTTGGATATTTAATTGTCCCGTATCCAATAGTCCAAAC 11351 |||||| | || ||| | || || |||||||||||||| || Sbjct 1257 CTTACCATTAGGGTATCGCGTCGTGCCATATCCAATAGTCCAGAC 1213 >seq11171 Length=1283 Score = 109 bits (120), Expect = 6e-19 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 75944 TTGGTGGGCCTCCCCAGACTTGAACTGGGAACCAACGGATTATGAGTCCGCTGCTCTAAC 76003 |||||||||| | ||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 343 TTGGTGGGCCCACACAGACTTGAACTGTGGACCAACGGATTATGAGTCCGCTGCTCTAAC 284 Query 76004 CAATTGAGCTAAAGGCCC 76021 ||| ||||||| |||||| Sbjct 283 CAACTGAGCTATAGGCCC 266 >seq8146 Length=1768 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/80 (89%), Gaps = 5/80 (6%) Strand=Plus/Plus Query 75945 TGGT-GGGCCTCCCCAGACTTGAACTGGGAACCAACGGATTATGAGTCCGCTGCTCTAAC 76003 |||| ||||||||| ||| | |||||||| |||||||||||||||||||||||||||||| Sbjct 37 TGGTAGGGCCTCCC-AGAGTCGAACTGGGCACCAACGGATTATGAGTCCGCTGCTCTAAC 95 Query 76004 CAA--TTGAGCTAAAGGCCC 76021 ||| |||||| ||||||| Sbjct 96 CAAGCATGAGCT-AAGGCCC 114 >seq1881 Length=6029 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 6157 CTAGATATCAATAGAAGAGAATTGTGCAATAATAGTCAAACCTACTGAAATGAAGATAAG 6216 ||| ||||||||| || |||| |||||||| ||| || || | |||||| || Sbjct 3895 CTAAATATCAATATTGGAATATTGAGCAATAATCATCAGCCCCACCGTAATGAATCCAAT 3954 Query 6217 ACCGACCCATGCACCAAGGTCTAAATTTTGATTAAGCATTATTTTTGCAAGAAATGCAGT 6276 ||||||||| | | | || | |||||| ||| | || ||||| ||| | || || Sbjct 3955 TCCGACCCATCCTGCCACATCAATATTTTGCCCAAGAAAAATCTTTGCCAGACAAGCTGT 4014 Query 6277 AGCAACGGCACCAAGGCCTGACCACATAACATACAATATACCAGCTTGCATATATTTTAA 6336 ||| | | |||| || ||||| | |||||||| || ||||| ||||||||||| || Sbjct 4015 AGCTAATACGCCAATTCCAGACCAAAGTACATACAAAATTCCAGCCTGCATATATTTCAA 4074 Query 6337 TGCGAT---AACACAAGCAATAAATGATCCAGTATATAATAT 6375 || || | ||||||| | || |||| ||||||| || Sbjct 4075 AGCAATGGCAGCACAAGCGA-AAGAGATC--ATATATAAAAT 4113 >seq31058 Length=331 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/95 (81%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 75944 TTGGTGGGCCTCCCCAGACTTGAACTGGGAACCAACGGATTATGAGTCCGCTGCTCTAAC 76003 |||||||||| | | |||| |||| | | ||||| ||||||||||||| |||||||||| Sbjct 251 TTGGTGGGCCCACACGGACTCGAACCGTGGACCAAAGGATTATGAGTCCTCTGCTCTAAC 192 Query 76004 CAATTGAGCTAAAGGCCCAAAAATGGTCCGCCTGA 76038 ||| ||||||| |||||| | | |||| ||| || Sbjct 191 CAACTGAGCTATAGGCCCCAGA--GGTCGGCCGGA 159 >seq15025 Length=942 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 75944 TTGGTGGGCCTCCCCAGACTTGAACTGGGAACCAACGGATTATGAGTCCGCTGCTCTAAC 76003 |||||||||| || |||| |||| |||||||| ||||||||||||| |||||||||| Sbjct 106 TTGGTGGGCCCACCAGGACTCGAACCTGGAACCAAAGGATTATGAGTCCTCTGCTCTAAC 47 Query 76004 CAATTGAGCTAAAGGCCC 76021 | ||||||||| |||||| Sbjct 46 C-ATTGAGCTATAGGCCC 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533033501290680