Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_018282.1 Length=61167 Score E Sequences producing significant alignments: (Bits) Value seq13677 125 3e-24 seq2903 95.1 5e-15 >seq13677 Length=1044 Score = 125 bits (138), Expect = 3e-24 Identities = 136/178 (76%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 6585 CTGTGGGACGCGATCATGCGCGGGACCTGGGATTGGGCGGAGCCGGGCGTGCTGTTCATC 6644 ||||||||| ||||||| | ||| | || | || ||||||||| | | | ||| Sbjct 641 CTGTGGGACATGATCATGGTCTCGACGTACGACTACGCCGAGCCGGGCTTCATCCTGATC 582 Query 6645 GAC-GCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGCCACCAACCC 6703 ||| ||| ||||| ||||||||| ||||| |||||||||||| ||| |||||||| Sbjct 581 GACCGCG-TCAACGAGATGAACAACAACTGGTGGTGCGAGACCATCCGCGCGACCAACCC 523 Query 6704 CTGCGGTGAGCAACCCCTCCCGCCCTACGGTGCCTGTCTCCTGGGCTCCTTCAACCTG 6761 ||||| ||||| || || ||||| ||||| ||||| || |||||||| |||||||| Sbjct 522 GTGCGGCGAGCAGCCGCTACCGCCGTACGGCGCCTGCCTGCTGGGCTCGGTCAACCTG 465 >seq2903 Length=4332 Score = 95.1 bits (104), Expect = 5e-15 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 6576 GCCCGGGCGCTGTGGGACGCGATCATG-CGCGGGACCTGGGATTGGGCGGAGCCGGGCGT 6634 || || | |||||||||| | | ||| || || ||| || | || ||||||||| | Sbjct 381 GCGCGCGAGCTGTGGGACACCGTGATGACGTCGG-CCTACGACTTCGCCGAGCCGGGCAT 323 Query 6635 GCTGTTCATCGACGCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGC 6694 || ||| | ||| |||||| |||||||| | ||||||||| ||||||||| Sbjct 322 CCTCTTCCTGGACCGCATCAACGAGGACAACAACCTGCGCTACTGCGAGGACATCGCCGC 263 Query 6695 CACCAACCCCTGCGGTGAGCAACCCCTCCCGCCCTACGG 6733 |||||| |||||||| ||||| ||||| ||| ||||||| Sbjct 262 CACCAATCCCTGCGGCGAGCAGCCCCTGCCGTCCTACGG 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195530246385822