Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq8212 95.1 3e-15 seq1466 80.6 7e-11 >seq8212 Length=1751 Score = 95.1 bits (104), Expect = 3e-15 Identities = 190/277 (69%), Gaps = 10/277 (4%) Strand=Plus/Minus Query 33600 TGGGATGGCACGTTTAAATGGGCGTGGACGGATAACCCGGCCTGGGTGTTTTACGACCTG 33659 ||||| || || || || | | ||||| | || |||||||||||||| | |||| | Sbjct 1634 TGGGACGGTACCTTCAAGAGTGGCTGGACCAACAATCCGGCCTGGGTGTTCTTCGACATC 1575 Query 33660 GTGATCACTGATCGCTTCGGACTCGGCGACCGGCTGGACGC-CGATAACGTGGACAAATG 33718 || | || ||||||||||| || ||| | || | ||| || |||||||| || Sbjct 1574 GTCACCAACGATCGCTTCGGCCTGGGCCATCGTGT-TCCGCTGGACTGGGTGGACAAGTG 1516 Query 33719 GGCGCTCTACCAGGTGGCGCAATACTGCGATCAGATGGTGCCGGACGGCAGGGGCGGCGA 33778 | ||| |||||| | |||| ||||||||| | |||| || ||| ||| Sbjct 1515 GCGGCTGTACCAGATCGCGCGCTACTGCGATGAACTGGTCAGCGATGGCCAGGG------ 1462 Query 33779 CGGCAAAGAGCCACGCTATATGTGCAACGTCTACGTGCAGAGCCGGGCCGACGCAT-TCA 33837 |||||| ||||| |||| | |||| | | || |||||| ||| ||||| || | || Sbjct 1461 CGGCAAGGAGCCGCGCTTCACCTGCAGCCTGTATCTGCAGACCCGCGCCGAGGCCTATCG 1402 Query 33838 CGGTTTTGCGCGACTTTGCGGCCATCTTCCGGGGCAT 33874 | || |||| ||| | || |||| ||||| ||||| Sbjct 1401 C-GTGTTGCAGGACATCGCCACCATGTTCCGCGGCAT 1366 >seq1466 Length=7219 Score = 80.6 bits (88), Expect = 7e-11 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 17070 ACACAGGCGGCGATTCGGGCGGGGTACAGCGTCAAAACGGCTAACCGCACCGCCTCCGAA 17129 || || |||||||| ||||| || ||||||||||| || ||| | | |||||| || Sbjct 2244 ACCCAAGCGGCGATCCGGGCCGGCTACAGCGTCAAGACAGCTCGGCAGATCGCCTCTGAG 2303 Query 17130 AACCTGTCAAAACCTGACATCCAA 17153 ||||||||||||||| |||||||| Sbjct 2304 AACCTGTCAAAACCTCACATCCAA 2327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127741267150848