Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq14623 170 2e-37 seq32362 129 5e-25 seq25614 123 2e-23 seq7414 105 5e-18 seq27836 100 2e-16 seq19645 87.8 1e-12 >seq14623 Length=969 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | || | ||| || || ||||| || || |||||||||||||| Sbjct 260 CCACCCCTCAGACGGAGGACAAGATGCAGCGTGGATTCCTTCTGGATATTGTAATCGGCA 201 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| | |||| |||| ||||| || |||||||||| ||||||||| || || ||| Sbjct 200 AGGGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGGGA 141 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||| || |||||| |||||| | || | |||||||| | || ||| Sbjct 140 ATGCCTTCCTTATCCTGGATTTTTGCCTTTACATTGTCAATGGTGTCAGAGCTCTCGACT 81 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || |||||||| | |||||| || || || ||||| Sbjct 80 TCAAGAGTGATGGTCTTGCCGGTAAGAGTTTTGACGAAGATTTGCAT 34 Score = 118 bits (130), Expect = 8e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331 ||| |||||||| || || ||||||||||| | ||||| |||| || | ||||| || Sbjct 687 GGTGGATTCTTTCTGGATGTTGTAATCGGCAAGGGTTCTACCATCCTCGAGCTGCTTTCC 628 Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391 ||||| || |||||||| || || || |||||||| ||||| || || || || || Sbjct 627 GGCAAAGATTAAACGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTT 568 Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451 ||| | || | ||| || || | || ||||| | |||| ||| || || || | || Sbjct 567 GACATTATCAATAGTATCCGAGCTCTCAACTTCCAAGGTGATCGTCTTTCCAGTGAGGGT 508 Query 101452 TTTTACAAATATCTGCAT 101469 ||| ||||| |||||||| Sbjct 507 TTTAACAAAAATCTGCAT 490 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | || | ||| | |||||||||||| || |||||||| || || Sbjct 944 CCACCTCTCAGACGGAGGACAAGATGCAAGGTAGATTCTTTCTGAATATTGTAGTCAGCA 885 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| | |||| || | || || || ||||| |||| ||||| || || || || Sbjct 884 AGGGTTCGGCCATCTTCGAGCTGTTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 825 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || || || || ||| | || | ||||| || | |||||| Sbjct 824 ATGCCTTCCTTGTCCTGTATCTTAGCCTTCACATTGTCGATGGTGTCCGAGCTCTCCACT 765 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | ||| | || || || |||| ||||| ||||| ||||||||| Sbjct 764 TCCAAAGTAATGGTCTTACCTGTTAGGGTTTTGACAAAGATCTGCATG 717 >seq32362 Length=298 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || | ||||| |||||||| || || || || |||||||| | ||||| | Sbjct 221 ACGCAAGACAAGGTGAAGTGTAGATTCCTTCTGGATGTTATAATCGGCCAGAGTTCGCCC 162 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||| || ||||| |||||||| | | ||| ||||| || ||||| ||||| || Sbjct 161 ATCCTCCAGCTGTTTACCAGCAAATATGAGCCTCTGCTGATCAGGTGGAATCCCTTCCTT 102 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || |||||||| |||||| | || | || || || | || || || || |||| Sbjct 101 GTCCTGAATTTTCGCTTTTACGTTATCAATCGTATCGGAGCTCTCAACCTCCAGTGTGAT 42 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || || || || |||||||||||||| Sbjct 41 AGTCTTGCCTGTCAACGTCTTCACAAATATCTGCAT 6 >seq25614 Length=477 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||||| ||| | || ||||| ||||| ||||| ||||| ||||||||||| || Sbjct 44 CCTCCTCTTAGACGAAGCACCAAATGCAGGGTCGATTCCTTTTGAATATTGTAATCAGCC 103 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || ||| |||| |||| |||||||| || || || | | ||| || || || ||| Sbjct 104 AAGGTCCTGCCATCCTCCAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGA 163 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || || || || || || | || | ||||| || | || ||| Sbjct 164 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGCTCTCAACT 223 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | || | || || || |||| ||||||||||| || |||||| Sbjct 224 TCCAATGTAATTGTCTTTCCAGTTAGTGTTTTTACAAAGATTTGCATG 271 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || ||||| | ||| | || |||||||||||||| || || ||||||||||| Sbjct 272 CCACCCCTCAAACGGAGAACAAGGTGGAGGGTAGATTCTTTCTGGATGTTGTAATCGGCA 331 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| | | || || | ||||| ||||| || |||| |||||| || ||||| || Sbjct 332 AGGGTTCGGCCGTCCTCAAGCTGCTTTCCTGCGAAGATCAGACGCTGCTGGTCGGGGGGG 391 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || || || || ||| ||| | || | |||||||| | || ||| Sbjct 392 ATCCCTTCCTTGTCCTGGATCTTAGCTTTAACATTGTCAATGGTGTCAGAGCTCTCGACT 451 Query 101423 TCAAGAGTGACCGTTTTGCCGGT 101445 || ||||||| || || ||||| Sbjct 452 TCGAGAGTGATGGTCTTACCGGT 474 >seq7414 Length=1926 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||| ||| | || | | |||| |||| ||| Sbjct 22 TGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAACGTGCGGCCATCCTCCAGCTGC 81 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || ||||||||||| || || || ||||||||||| || || ||||| || Sbjct 82 TTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTTC 141 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || | || | | ||| |||| || || |||||||||| ||| ||||| || Sbjct 142 GTCTTCACGTTGTCGATCGAGTCCGACGACTCGACGTCAAGAGTGATCGTCTTGCCCGTC 201 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || || || || || |||||||| Sbjct 202 AACGTCTTCACGAAAATCTGCAT 224 >seq27836 Length=415 Score = 100 bits (110), Expect = 2e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 |||||||| ||||| || || |||||||||||||| | ||| | |||| |||| ||| Sbjct 160 TGAAGGGTCGATTCCTTCTGAATATTGTAATCGGCCAGAGTACGACCATCTTCCAGCTGC 101 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| ||||| | ||| || || || ||||| || || || || || || || Sbjct 100 TTACCGGCAAAGATCAACCTCTGCTGGTCAGGTGGAATTCCCTCCTTGTCCTGGATCTTA 41 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTC 101424 || ||| | || | ||||| || |||||||||| Sbjct 40 GCCTTCACATTGTCAATGGTGTCCGAGCTTTCCACTTC 3 >seq19645 Length=690 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || || || || |||| || | | |||| || | ||| Sbjct 322 TGGAGGGTCGACTCCTTCTGGATGTTATAGTCCGCGAGTGTGCGGCCATCCTCGAGCTGC 263 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || ||||||| | ||| || || || ||||||||||| || || || || || Sbjct 262 TTCCCGGCGAATATCAGCCTCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTGGATCTTC 203 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| || | ||||| || || |||| || || ||||| Sbjct 202 GCCTTGACATTGTCAATCGTGTCGGAGCTCTCCACCTCGAGCGTGATGGTCTTCCCGGTA 143 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 142 AGGGTCTTCACGAAGATCTGCAT 120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396106759317423