Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq6764 109 4e-19 seq4190 109 4e-19 seq4223 82.4 5e-11 >seq6764 Length=2098 Score = 109 bits (120), Expect = 4e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 15937 CGACGATCTGGTGGGTTGCCGCATCATCCGCAAGATGACGCTGGCGCGTTTTCTCGATGC 15996 ||| || ||||| ||| ||||||||||||| | ||||||||| | || ||||| Sbjct 296 CGATGACCTGGTCGGTGCCCGCATCATCCGCCGGCAGACGCTGGCCAAGTACCTGGATGC 237 Query 15997 GGCCAACTTCAAAGACGGGAATCCAACCGCAGATCCAAATCAGCACTTCCCGGATGAGAT 16056 |||||||| | || || ||||| || || ||||| |||||||||| ||||| | Sbjct 236 CACCAACTTCGAGGAAGGTAATCCCACTGCGGATCCTGCCGAGCACTTCCCCGATGACGT 177 Query 16057 GTGGTTCATCGAACAGAAGACTCTCGAAACTCATGAGGTCGTCGAGTTTGAGCTGTCGAG 16116 ||||||||||||| |||| |||| | || | |||||||| |||||| | | Sbjct 176 CTGGTTCATCGAACGCAAGATCGGCGAAGACAAGCAGATGGTCGAGTTCGAGCTGACCAC 117 Query 16117 TGTGTTCGATCTGATGGGCGTGCAGCTGCCGTACCGCCAGATCAT 16161 | | | ||||| | | | |||||||||| | | |||||||| Sbjct 116 CGCGATTGATCTCAATGACCAGCAGCTGCCGGGCAGGCAGATCAT 72 >seq4190 Length=3182 Score = 109 bits (120), Expect = 4e-19 Identities = 164/228 (72%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 15937 CGACGATCTGGTGGGTTGCCGCATCATCCGCAAGATGACGCTGGCGCGTTTTCTCGATGC 15996 ||| || ||||| ||| |||||||||||| | ||||||||| | || ||||| Sbjct 2764 CGATGACCTGGTCGGTGCACGCATCATCCGCCGGCAGACGCTGGCCAAGTACCTGGATGC 2823 Query 15997 GGCCAACTTCAAAGACGGGAATCCAACCGCAGATCCAAATCAGCACTTCCCGGATGAGAT 16056 ||||||||| | || || ||||| | ||| ||||| |||||||||| ||||| | Sbjct 2824 CGCCAACTTCGAGGAAGGCAATCCCAGCGCGGATCCTGGCGAGCACTTCCCTGATGAAGT 2883 Query 16057 GTGGTTCATCGAACAGAAGACTCTCGAAACTCATG-AGGTCGTCGAGTTTGAGCTGTCGA 16115 ||||||||||| | |||| || | || | || | |||||||| |||||| | | Sbjct 2884 CTGGTTCATCGAGCGCAAGA-TCGGTGAGGACAAGCAGATGGTCGAGTTCGAGCTGACCA 2942 Query 16116 GTGTGTTCGATCT-GATGGGCGTGCAGCTGCCGTACCGCCAGATCATC 16162 | | ||||||| |||||| |||||||||| | | ||||||||| Sbjct 2943 CCGCGATCGATCTCAATGGGC-AGCAGCTGCCGGGCAGGCAGATCATC 2989 >seq4223 Length=3159 Score = 82.4 bits (90), Expect = 5e-11 Identities = 173/256 (68%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 79549 ACGACCAACAATCGGATGGAGATGATGGGCGCCCTGATTGCGCTGGAGCGTCTGAAGTAC 79608 || |||||||| || |||||| |||||| || | | || || ||| || || | Sbjct 256 ACCACCAACAACCGTATGGAGTTGATGGCGGCGATTGTGGCCCTCGAGGCGCTAAAAGAG 197 Query 79609 CCCTGCAACGTGATCCTGCATTCCGACAGCCAGTATCTAAAAAACGGCATGACGCTCTGG 79668 | |||| | | | ||| ||||||| |||||| | | || || |||| ||| Sbjct 196 CACTGCGATATCGTGCTGAGCACCGACAGTCAGTATGTGCGCCAGGGGATCACGCAGTGG 137 Query 79669 ATGAAAGGCTGGAAGCGTAACGGA--TGGATCACGTCTGAGAAGAAGCCAGTCAAAAACG 79726 || | |||||| ||||| |||| ||| | || || || || || || || | Sbjct 136 ATCCATAACTGGAAAA--AACGGGGCTGGAAAACGGCCGACAAAAAACCGGTGAAGAATG 79 Query 79727 TCGATCTCTGGAAACGTCTTGATGCGGCCGCCAGCCGTCACAATGTCCGCTGGAAGTGGG 79786 ||||||||||| | ||||| |||||||| ||||| || || ||| ||| |||||| Sbjct 78 TCGATCTCTGGCAGCGTCTGGATGCGGCACTCAGCCAGCATAAAATCCAGTGGGAGTGGG 19 Query 79787 TTAAAGGTCATGCCGG 79802 | ||||| || ||||| Sbjct 18 TGAAAGGCCACGCCGG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330288879471540