Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq14623 98.7 8e-16 seq7414 86.0 5e-12 >seq14623 Length=969 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | || | ||| |||||| || || || ||||||||||| | Sbjct 261 GCCACCCCTCAGACGGAGGACAAGATGCAGCGTGGATTCCTTCTGGATATTGTAATCGGC 202 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || |||| | || |||| |||||| || ||||||||||| |||||||| |||| ||| Sbjct 201 AAGGGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGGG 142 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||| ||||| || || ||| |||||| | | | || || ||| || Sbjct 141 AATGCCTTCCTTATCCTGGATTTTTGCCTTTACATTGTCAATGGTGTCAGAGCTCTCGAC 82 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | || || || || || || | |||||| || || || |||||| Sbjct 81 TTCAAGAGTGATGGTCTTGCCGGTAAGAGTTTTGACGAAGATTTGCATC 33 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | |||| || | ||| ||||| || || |||||||| | Sbjct 717 GCCACCCCTCAGACGGAGGACCAGGTGCAAGGTGGATTCTTTCTGGATGTTGTAATCGGC 658 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || ||| | | || || | |||||| |||||||| || | ||||| || || | ||| Sbjct 657 AAGGGTTCTACCATCCTCGAGCTGCTTTCCGGCAAAGATTAAACGCTGCTGGTCAGGGGG 598 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||| ||||| ||||| || ||| | | | || || || ||| || Sbjct 597 AATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATAGTATCCGAGCTCTCAAC 538 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || ||||| ||||| || | ||||| |||||||||||||| Sbjct 537 TTCCAAGGTGATCGTCTTTCCAGTGAGGGTTTTAACAAAAATCTGCAT 490 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || |||||||||||||| || | || |||| |||| || | |||||| ||||||||| Sbjct 452 TCCTTTTGAATATTGTAGTCTGCCAGGGTTCGGCCGTCTTCGAGCTGCTTTCCGGCAAAT 393 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||| || || || || | || | || |||||||| ||||| ||||||| Sbjct 392 ATCAGACGTTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTTACATTG 333 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||| || |||| ||| ||||| || || |||| ||||| || Sbjct 332 TCAATGGTATCCGAGCTCTCAACTTCCAACGTTATCGTCTTACCAGTCAGGGTTTTGACG 273 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 272 AAGATCTGCAT 262 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| ||||||||||| |||| || |||| | || || | ||| || || ||||| Sbjct 908 TCTTTCTGAATATTGTAGTCAGCAAGGGTTCGGCCATCTTCGAGCTGTTTTCCAGCAAAG 849 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||| ||||| || || | ||| | ||| |||||||| ||||| || ||| Sbjct 848 ATCAGGCGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGTATCTTAGCCTTCACATTG 789 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || |||||| |||| ||||| || || || || | ||||| ||| Sbjct 788 TCGATGGTGTCCGAGCTCTCCACTTCCAAAGTAATGGTCTTACCTGTTAGGGTTTTGACA 729 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 728 AAGATCTGCAT 718 >seq7414 Length=1926 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTT-CGATCGTCGTCCAACTG 48622 || ||||| ||| || ||||| ||||| || | | || | || | || |||| ||| Sbjct 22 TGCAGCGTCGACTCCTTCTGAATGTTGTAGTC-GCTCAACGTGCGGCCATCCTCCAGCTG 80 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| ||||| || |||| ||||| || || | |||| ||| |||||||| |||||| Sbjct 81 CTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGAATCTT 140 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || || | | || || |||| ||| || || | || ||||| || ||||| Sbjct 141 CGTCTTCACGTTGTCGATCGAGTCCGACGACTCGACGTCAAGAGTGATCGTCTTGCCCGT 200 Query 48743 CAAAGTTTTTACAAAAATCTGCATCGTGT 48771 ||| || || || |||||||||||| ||| Sbjct 201 CAACGTCTTCACGAAAATCTGCATCTTGT 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380772603902097