Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019400.1 Length=147940 Score E Sequences producing significant alignments: (Bits) Value seq3714 86.0 6e-12 >seq3714 Length=3526 Score = 86.0 bits (94), Expect = 6e-12 Identities = 164/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 82546 AAAGGTGCAGTTGAATGCCTATGGGACATCTTTGGTGGGGAAGTTAACTCCAAAGGTTAC 82605 ||||| || ||||||||| ||||||| | ||||| || | | | |||| || Sbjct 2060 AAAGGCGCGGTTGAATGCTTATGGGAAGTGTTTGGCGGTACAACGACAGACCAAGGCTAT 2119 Query 82606 AAGGTTCTTGATACTCACGTAGGCCTGATCTACGGTGACTCGATTACCGTTGCTCGTGCA 82665 || || || || | || ||| | || |||||||||||||||||| | | ||||| Sbjct 2120 AAAGTACTGAATGAGCGTGTCGGCTTAATTTACGGTGACTCGATTACCCTAGACCGTGCG 2179 Query 82666 AAAGATATCTTTGAACGTCTGAAAGATAAAGGTTTTGCATCCAGCAATATCGTGTTTGGT 82725 | || || ||| | || ||| ||||||||||| || | ||| | |||||||| Sbjct 2180 CAGCGCATTTTAGAAGGACTTGAAGCCAAAGGTTTTGCTTCAAACAACTTGGTGTTTGGG 2239 Query 82726 GTTGGTTCTTATACCACTCAGTACACAACCCGCGATTCACTGGGTATGGCTGTTAAAGCG 82785 |||| || |||| | | ||| ||| |||||| | | || | ||||| |||||| Sbjct 2240 ATTGGCAGTTTTACCTATAACTACTTAACTCGCGATACCTTTGGATTTGCTGTGAAAGCG 2299 Query 82786 AC 82787 || Sbjct 2300 AC 2301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473069751276000