Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq35409 113 1e-19 seq3205 93.3 1e-13 >seq35409 Length=1007 Score = 113 bits (124), Expect = 1e-19 Identities = 73/80 (91%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 324512 TATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCG 324571 || ||||||||||||||| |||||||||| |||||||||||| || |||||||||||||| Sbjct 657 TAAGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCG 598 Query 324572 AACCCGTTTAGCTCCACAAA 324591 | ||||||||||||||| || Sbjct 597 ATCCCGTTTAGCTCCACCAA 578 >seq3205 Length=3996 Score = 93.3 bits (102), Expect = 1e-13 Identities = 175/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Minus Query 133968 AAATGACTTTGCCACCATGTCATT-GCTTTAGTCAATTCTTCGTAAATGACGGTAAGTTA 134026 || || |||| ||||| || || ||||| |||||| |||||| | || || || Sbjct 2399 AAGTGGCTTTACCACCTTGCCACACGCTTTT-TCAATTTTTCGTACAAGATAACAAATTG 2341 Query 134027 TCATGTATTCTATATCAACGTAGCTGTGATCTATTCTTAGGAGTACCATTCAACATTGCT 134086 ||||| || ||||||||||| || | || ||||| || || || |||||||| Sbjct 2340 TCATGCCAGCTTTATCAACGTAGTGCAGACGTGTTTTTAGGGGTTCCTTTTAACATTGCC 2281 Query 134087 TCATATTCATTACTAACTCATATGTTAGCACAAGTTTGTGGGTTAGAAGTTGGTGAGTTT 134146 ||| | ||||| ||||| ||| | || ||||| || || |||| ||| ||||| ||| Sbjct 2280 AGTTATGCTTTACTCACTCACATGATTGCTCAAGTGTGCGGTTTAGGAGTCGGTGACTTT 2221 Query 134147 GTATGGATGGGTGGAGATGTTCACATTTATAAAAATCACGTAGAAGCAGTTCAGGAACAA 134206 || |||| || || ||| || ||||| ||||| | ||| || || ||| Sbjct 2220 GTTTGGACAGGCGGTGATACGCATCTTTATGTCAATCATTTTGAACAAGCACAACTTCAA 2161 Query 134207 CTTTCACGTGAACCT 134221 | ||||||||||| Sbjct 2160 TTGACACGTGAACCT 2146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147067852242422