Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq14750 358 9e-94 seq1923 322 7e-83 seq26881 206 4e-48 seq8325 86.0 9e-12 >seq14750 Length=960 Score = 358 bits (396), Expect = 9e-94 Identities = 513/715 (72%), Gaps = 16/715 (2%) Strand=Plus/Minus Query 136675 GTGTGGACGATGTCCACGAGGTCCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTGTAG 136734 ||||| || | ||||| ||||| |||| || ||| || || |||||||||||||| Sbjct 712 GTGTGCACCACTTCCACCAGGTCGCTCTGCGCGGACATCACGGCCTCGATGTCCTTGTAC 653 Query 136735 GCCATCGGGATTTCGTCGATCACGCCAGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCC 136794 ||| ||| ||||||||||||||| |||||||||||||| || ||| | | |||||| Sbjct 652 GCCGCCGGCGATTCGTCGATCACGCCCGCGTCCTTGCGGCATTCGACGTGCGCCGTGGCC 593 Query 136795 TTGATCTGGTCCTCCAGGGTGAAGGTCGCCTTGGCCTG----GGTCCGCGACATCGTCCG 136850 | | || | | ||| |||| || || ||| || ||| || || | || Sbjct 592 TCGCGGTGCTGCGACAGCGTGA---TCTGCT-GGCGTGCGGCGGTACGGCTCAGCACGCG 537 Query 136851 GCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTA 136910 ||| |||||||| ||| | ||| |||||| ||||||||||||||||||||| | Sbjct 536 GCCGGCGCCGTGGCTGCAGCTGTGGAAGCTGTCCGCGTTGCCCTTGCCGCGCACGATGAA 477 Query 136911 GGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGC 136970 | ||| || ||||| |||||| |||||||| | || | | |||| |||||| Sbjct 476 GCTCTTCGCGCCCATGCTGCCGGGAATGATCCCCAGCTCGCCAGCACGCGCGCTCACCGC 417 Query 136971 GCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTAGTTGTG 137030 ||||||||||| || | | | |||| | ||| |||||||| ||||||||||| Sbjct 416 ACCCTTGCGGGTGACCAGCAGCTCCTCGCCACCGTGCGTCTCCTTCTGCACGTAGTTGTG 357 Query 137031 GTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGGCGGCAGGCCCGACGCCCGCATGGC 137090 ||||||||| ||||| ||| ||| || |||| ||||||| || | ||||| | Sbjct 356 GTGGCAGTTGACCGCCATCTTTTCCAGCTGGAACTTCGGCAGG--CGGTG-GCGCATCTC 300 Query 137091 CTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGC 137150 |||| || || ||||||| ||||||||| || ||| ||||||| |||||| Sbjct 299 GGCCAGCACGCGCGACATCATCGCCTCGCGGTTCTCGCGGGCGTAGTCCTGCGCCCAGGA 240 Query 137151 GACGGCTTCCACGTAGTCGTGGAACTCCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTT 137210 |||||| ||||||||||||| |||| ||||||||| || || | || |||||||| Sbjct 239 GACGGCCTCCACGTAGTCGTCGAACAGCGGCTCGCCCTCCATGAAGAAGGCCAGGTCCTT 180 Query 137211 GTCCAGCGGCTTG-CGCCCGTCACGACGCAGCATCATCTCCTTG---GCCTTCTCGATGA 137266 |||| || | | | ||| |||| || || || | || | ||| |||||||| Sbjct 179 GTCCGGCAGGTGGAACCCCAGCACG-CGATGCGCCAATTGCTCGCGAGCCCGCTCGATGA 121 Query 137267 AGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGC 137326 || | |||||| ||||||| ||||||||||| ||| ||||||||||||||| Sbjct 120 AGTAGGTGCCGATCAGGTTGCCGGTACCGCGCGAGCCGCTGTGCAGCATCACCCAGACGG 61 Query 137327 GCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCC 137381 | | ||||||||||||| |||||||||||||||||||||||| || ||||| Sbjct 60 CATCGCTTTCGTCGAGGCAGAGCTCGATGAAGTGGTTGCCGCCGCCGAGCGTGCC 6 >seq1923 Length=5946 Score = 322 bits (356), Expect = 7e-83 Identities = 714/1045 (68%), Gaps = 52/1045 (5%) Strand=Plus/Minus Query 136645 TAGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGG 136704 || ||||||||||| || || || |||||||| || | || || |||||| ||| Sbjct 4506 TACCCCTTCACGCACAGCACCTGGCGCAGGGTGTGCACCACCTCGACCAGGTCCAGCTGC 4447 Query 136705 GCCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCG 136764 || |||| || ||||||| |||||| || ||| ||||| | |||||| | Sbjct 4446 GCTGCCATCACATCGTCGATCGACTTGTACGCGGCCGGTGACTCGTCCAGCACGCCGCTG 4387 Query 136765 TCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAGGTCGCC 136824 ||||||||||| |||||| | ||||||||| | || | |||| |||| || | Sbjct 4386 TCCTTGCGGCATTCCACGTGCGCGGTGGCCTCGCGGTGCTGGGCCAGCGTGA---TCTGC 4330 Query 136825 TTGGCCTGGGT-CCGCGAC--ATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAG 136881 | | | || || || | ||| |||||| || ||||| ||| | ||| | Sbjct 4329 TGGCGCGCCGTGCCACGGCTCATCACCCGGCCGGCCCCGTGGCTGCAGCTGTGGAAGCTG 4270 Query 136882 TCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCC--CCCATCGAGCCGGGGATGA 136939 || || |||||||||||||||||||||||| || || ||||| |||||| |||| Sbjct 4269 TCGGCGTTGCCCTTGCCGCGCACGATGTAG--CTGCGCGTGCCCATGCTGCCGGGAATGA 4212 Query 136940 TCCCGAACTGGTCCTTCTGCGCCGAC--ACCGCGCCCTTGCGGGTCACGAAGACCCACTC 136997 | || | || | ||||| ||| || || || ||||| |||||||| | | || Sbjct 4211 TGCCCAGCTCG-CCTTC-GCGGGCACTGACGGCCCCCTTCCGGGTCACCAGCAGTTCCTG 4154 Query 136998 GTCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCT-TCCTTGTCCG 137056 | || ||| ||||||||| |||||||||||||||||||||||||| || || | | Sbjct 4153 GCCGTGGTGCGTTTCCTTCTGCACGTAGTTGTGGTGGCAGTTCACCGCCATCGCTGCCAG 4094 Query 137057 TCTTGAACGGCGGCAGGCCCGACGCCCGCATGGCCTCCAGGACCCGGACCATCATCATCT 137116 || |||| ||||| || | || |||| | |||| || || ||||||| || Sbjct 4093 -CTGGAACTTCGGCAAGCG-GTGGC--GCATCTCGGCCAGCACGCGCGACATCATCGCCT 4038 Query 137117 CGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACT 137176 ||||||| ||| ||| ||||||| |||| | |||||||| |||||||| | |||| Sbjct 4037 CGCGGTTCTGCCGGGCGTAGTCCTGCGCCCACGACACGGCTTCGACGTAGTCATCGAACA 3978 Query 137177 CCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGT-CACGA 137235 |||||||||||| || | || |||||||||||| || | | | ||| |||| Sbjct 3977 GCGGCTCGCCTTCCATGAAGAACGCCAGGTCCTTGTCCGGCAGGTGGAAGCCGAGCACG- 3919 Query 137236 CGCAGCATCATCTCCTTG---GCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACG 137292 ||| | || |||| | ||||||||||||||| | |||||| ||||||| | Sbjct 3918 CGCCGGGCCAGTTCCTCGCGCGCCTTCTCGATGAAGTAGGTGCCGATCAGGTTGCCGGTG 3859 Query 137293 CCGCGCGAGCCCGAGTGGAGCATCACCCAGAC-GCGCTGGTCCTCGTCGAGGCAGACCTC 137351 |||||||| || ||| ||||||||||| || | | |||| ||||| ||||| | || Sbjct 3858 CCGCGCGATCCGCTGTGCAGCATCACCCACACCGTGTCGGTC-TCGTCCAGGCACAGTTC 3800 Query 137352 GATGAAGTGGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTT----CT 137407 |||||||||||||||||| ||||| |||||||| ||| || ||| || | | Sbjct 3799 GATGAAGTGGTTGCCGCCACCCAGCGTGCCCAGCTGGCGGTCGAGCTTGTCGGTGCGGAT 3740 Query 137408 TCAGCGCCGGGTACTTCTCGCAGAGCTTGTCGAACCGCGCCTCCAGGCCCGAAT---CGA 137464 || || ||| | | || || ||| || | | || |||| || || | ||| Sbjct 3739 TCTGC----GGTGCCTGTCCTTGATCTTCTCCAGGCCGGCGGCCAGCCCGGACTGCACGA 3684 Query 137465 CCCACTTGCGCAGGATCGAGTTGGGGATGCCGCTGCGCCCGTTCCAGCCGCCCGACGGAC 137524 || || |||| || ||| ||| || || | | |||||| ||| | Sbjct 3683 GCCGGGTG---TGGATGCTGTCGGGCATG-CGGTG-----ATGCTCGCCGCC--ACG--C 3637 Query 137525 CCGGCCCGCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGACAGGCTGTCGG 137584 || |||| ||| | | | ||||||| ||| |||| |||| |||| Sbjct 3636 CC--ATTGCCGACCGGAATGCTGCGCTCGATGCTGTTGCGCAGCTGCCGCAGGTCATCGG 3579 Query 137585 GAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGC 137644 | ||||| ||| ||| ||||||| || ||| ||||||||||||||||||||||| Sbjct 3578 GCAGGTCGTTGGCGCGCAGCGTGGTGCGTACGGCCGCCATGCCGCAGCCGATGTCGACGC 3519 Query 137645 CGACGGCGGCCGGGATGATCGCGCC 137669 |||| ||||||||||||||||| || Sbjct 3518 CGACTGCGGCCGGGATGATCGCACC 3494 >seq26881 Length=441 Score = 206 bits (228), Expect = 4e-48 Identities = 310/431 (72%), Gaps = 11/431 (3%) Strand=Plus/Minus Query 137016 CTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGGC--GGCAGG 137073 ||| ||||||||||||||||||||||| |||||| | ||||| ||||||| || Sbjct 438 CTGCACGTAGTTGTGGTGGCAGTTCACGGCTTCCACATGCGTCTCGAACGGCTTGGTGAT 379 Query 137074 CCCGACGCCCGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCG-C 137132 | | || ||| || | | || ||| ||||||||| |||||||||| | ||| | Sbjct 378 CACTTTGC--GCAGCGCGGCGATCACGCGGCCCATCATCACCTCGCGGTTGG-CTGCGGC 322 Query 137133 GAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGGCTCGCCTTCGCA 137192 ||| | ||| |||| | ||||| | |||||||||| || | | || ||||||| Sbjct 321 GAATTTCTGCGCCCACCCCACGGCCTTCACGTAGTCGCCAAAGTACTGCGCGCCTTCCTC 262 Query 137193 GAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGACGCAGCATCATCTCCTT 137252 || | || ||||||||||| || | |||||| || | | | || || || ||| Sbjct 261 GAAGTACGCCAGGTCCTTGTCGGGCAGGTTGCGCTGGTT-CATCTCGGCGTC--CTTCTT 205 Query 137253 GGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAG 137312 |||| |||||||||| | |||||||| ||| || || || ||||| |||||||| || Sbjct 204 GGCCAGCTCGATGAAGTGGGTGCCGATGGCGTTCCCCACCCCACGCGATCCCGAGTGCAG 145 Query 137313 CATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCC 137372 ||||||||| ||| ||||| ||||| ||||||| ||||||||||||||| || || Sbjct 144 CATCACCCACACGGACTGGTGTTCGTCCAGGCAGATCTCGATGAAGTGGTTACCCGTTCC 85 Query 137373 CAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCA-GCGCCGGGTACTTCTCGCAGA 137431 || || ||||| || | |||| | |||||| | ||| ||| | | ||||||| Sbjct 84 GAGCGTTCCCAGGTGCTTGTAGTTGTTCGTGTTCTTGATGCG-CGGATGCGCTTCGCAGA 26 Query 137432 GCTTGTCGAAC 137442 || ||||||| Sbjct 25 TCTCGTCGAAC 15 >seq8325 Length=1725 Score = 86.0 bits (94), Expect = 9e-12 Identities = 86/108 (80%), Gaps = 3/108 (3%) Strand=Plus/Plus Query 128566 CTTGCCCGGATCGGTGATCGGGTCCTTGTAGATTTCGACCCACTCGCCGTTGATCTCCTG 128625 |||||| | |||||||| ||| |||||||| | ||||||||||| |||| || | | || Sbjct 484 CTTGCCGGCATCGGTGACCGGATCCTTGTATACATCGACCCACTCACCGTCGA-CCCGTG 542 Query 128626 -GGCCGAGGACTTCATCGCCCACTTGTTGGTGTCGCGGTCCAGGTCGC 128672 |||||| |||||| ||| |||| | ||||||||||||| ||||| Sbjct 543 CCGCCGAGCACTTCAGCGCGAACTTCTGCGTGTCGCGGTCCA-GTCGC 589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 689837412154800