Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq14750 347 2e-90 seq1923 316 3e-81 seq26881 197 2e-45 seq10019 123 3e-23 seq8325 86.0 9e-12 >seq14750 Length=960 Score = 347 bits (384), Expect = 2e-90 Identities = 513/716 (72%), Gaps = 18/716 (3%) Strand=Plus/Minus Query 135435 GTGTGGACGATGTCCACGAGGTCCTTCTGGGCCTCCATGACCGCGTCGATGTCCTTGTAG 135494 ||||| || | ||||| ||||| |||| || ||| || || |||||||||||||| Sbjct 712 GTGTGCACCACTTCCACCAGGTCGCTCTGCGCGGACATCACGGCCTCGATGTCCTTGTAC 653 Query 135495 GCCATCGGGATTTCGTCGATCACGCCAGCGTCCTTACGGCACTCCACGCCCTCGGTGGCC 135554 ||| ||| ||||||||||||||| |||||||| ||||| || ||| | | |||||| Sbjct 652 GCCGCCGGCGATTCGTCGATCACGCCCGCGTCCTTGCGGCATTCGACGTGCGCCGTGGCC 593 Query 135555 TTGATCTGGTCCTCCAGGGTGAAGGTCGCCTTGGCCTG----GGTCCGCGACATCGTCCG 135610 | | || | | ||| |||| || || ||| || ||| || || | || Sbjct 592 TCGCGGTGCTGCGACAGCGTGA---TCTGCT-GGCGTGCGGCGGTACGGCTCAGCACGCG 537 Query 135611 GCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTA 135670 ||| |||||||| ||| | ||| |||||| ||||||||||||||||||||| | Sbjct 536 GCCGGCGCCGTGGCTGCAGCTGTGGAAGCTGTCCGCGTTGCCCTTGCCGCGCACGATGAA 477 Query 135671 GGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGC 135730 | ||| || ||||| |||||| |||||||| | || | | |||| |||||| Sbjct 476 GCTCTTCGCGCCCATGCTGCCGGGAATGATCCCCAGCTCGCCAGCACGCGCGCTCACCGC 417 Query 135731 GCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTAGTTGTG 135790 ||||||||||| || | | | |||| | ||| |||||||| ||||||||||| Sbjct 416 ACCCTTGCGGGTGACCAGCAGCTCCTCGCCACCGTGCGTCTCCTTCTGCACGTAGTTGTG 357 Query 135791 GTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGGCGGCAGGCCCGACGCCCGCATGGC 135850 ||||||||| ||||| ||| ||| || |||| ||||||| || | ||||| | Sbjct 356 GTGGCAGTTGACCGCCATCTTTTCCAGCTGGAACTTCGGCAGG--CGGTG-GCGCATCTC 300 Query 135851 CTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGC 135910 |||| || || ||||||| ||||||||| || ||| ||||||| |||||| Sbjct 299 GGCCAGCACGCGCGACATCATCGCCTCGCGGTTCTCGCGGGCGTAGTCCTGCGCCCAGGA 240 Query 135911 GACGGCTTCCACGTAGTCGTGGAACTCCGGTTCGCCTTCGCAGAGCCAAGCAAGGTCCTT 135970 |||||| ||||||||||||| |||| ||| ||||| || || | || |||||||| Sbjct 239 GACGGCCTCCACGTAGTCGTCGAACAGCGGCTCGCCCTCCATGAAGAAGGCCAGGTCCTT 180 Query 135971 GTCCAGCGGCTTG-CGCCCGTCACGCCGCAGCATCATCTCCTTG---GCCTTCTCGATGA 136026 |||| || | | | ||| |||| || || || | || | ||| |||||||| Sbjct 179 GTCCGGCAGGTGGAACCCCAGCACG-CGATGCGCCAATTGCTCGCGAGCCCGCTCGATGA 121 Query 136027 AGATACG-GCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACG 136085 || || | |||||| ||||||| ||||||||||| ||| ||||||||||||||| Sbjct 120 AG-TAGGTGCCGATCAGGTTGCCGGTACCGCGCGAGCCGCTGTGCAGCATCACCCAGACG 62 Query 136086 CGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCC 136141 | | ||||||||||||| |||||||||||||||||||||||| || ||||| Sbjct 61 GCATCGCTTTCGTCGAGGCAGAGCTCGATGAAGTGGTTGCCGCCGCCGAGCGTGCC 6 >seq1923 Length=5946 Score = 316 bits (350), Expect = 3e-81 Identities = 714/1047 (68%), Gaps = 56/1047 (5%) Strand=Plus/Minus Query 135405 TAGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGG 135464 || ||||||||||| || || || |||||||| || | || || |||||| ||| Sbjct 4506 TACCCCTTCACGCACAGCACCTGGCGCAGGGTGTGCACCACCTCGACCAGGTCCAGCTGC 4447 Query 135465 GCCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCG 135524 || |||| || ||||||| |||||| || ||| ||||| | |||||| | Sbjct 4446 GCTGCCATCACATCGTCGATCGACTTGTACGCGGCCGGTGACTCGTCCAGCACGCCGCTG 4387 Query 135525 TCCTTACGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAGGTCGCC 135584 ||||| ||||| |||||| | ||||||||| | || | |||| |||| || | Sbjct 4386 TCCTTGCGGCATTCCACGTGCGCGGTGGCCTCGCGGTGCTGGGCCAGCGTGA---TCTGC 4330 Query 135585 TTGGCCTGGGT-CCGCGAC--ATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAG 135641 | | | || || || | ||| |||||| || ||||| ||| | ||| | Sbjct 4329 TGGCGCGCCGTGCCACGGCTCATCACCCGGCCGGCCCCGTGGCTGCAGCTGTGGAAGCTG 4270 Query 135642 TCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCC--CCCATCGAGCCGGGGATGA 135699 || || |||||||||||||||||||||||| || || ||||| |||||| |||| Sbjct 4269 TCGGCGTTGCCCTTGCCGCGCACGATGTAG--CTGCGCGTGCCCATGCTGCCGGGAATGA 4212 Query 135700 TCCCGAACTGGTCCTTCTGCGCCGAC--ACCGCGCCCTTGCGGGTCACGAAGACCCACTC 135757 | || | || | ||||| ||| || || || ||||| |||||||| | | || Sbjct 4211 TGCCCAGCTCG-CCTTC-GCGGGCACTGACGGCCCCCTTCCGGGTCACCAGCAGTTCCTG 4154 Query 135758 GTCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCT-TCCTTGTCCG 135816 | || ||| ||||||||| |||||||||||||||||||||||||| || || | | Sbjct 4153 GCCGTGGTGCGTTTCCTTCTGCACGTAGTTGTGGTGGCAGTTCACCGCCATCGCTGCCAG 4094 Query 135817 TCTTGAACGGCGGCAGGCCCGACGCCCGCATGGCCTCCAGGACCCGGACCATCATCATCT 135876 || |||| ||||| || | || |||| | |||| || || ||||||| || Sbjct 4093 -CTGGAACTTCGGCAAGCG-GTGGC--GCATCTCGGCCAGCACGCGCGACATCATCGCCT 4038 Query 135877 CGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACT 135936 ||||||| ||| ||| ||||||| |||| | |||||||| |||||||| | |||| Sbjct 4037 CGCGGTTCTGCCGGGCGTAGTCCTGCGCCCACGACACGGCTTCGACGTAGTCATCGAACA 3978 Query 135937 CCGGTTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGT-CACGC 135995 ||| |||||||| || | || |||||||||||| || | | | ||| ||||| Sbjct 3977 GCGGCTCGCCTTCCATGAAGAACGCCAGGTCCTTGTCCGGCAGGTGGAAGCCGAGCACGC 3918 Query 135996 CGCAGCATCATCTCCTTG---GCCTTCTCGATGAAGATACG-GCCGATGGTGTTGCCGAC 136051 || | || |||| | ||||||||||||||| || | |||||| ||||||| Sbjct 3917 -GCCGGGCCAGTTCCTCGCGCGCCTTCTCGATGAAG-TAGGTGCCGATCAGGTTGCCGGT 3860 Query 136052 GCCGCGCGAGCCCGAGTGGAGCATCACCCAGAC-GCGCTGGTCCTCGTCGAGGCAGACCT 136110 ||||||||| || ||| ||||||||||| || | | |||| ||||| ||||| | | Sbjct 3859 GCCGCGCGATCCGCTGTGCAGCATCACCCACACCGTGTCGGTC-TCGTCCAGGCACAGTT 3801 Query 136111 CGATGAAGTGGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCA 136170 ||||||||||||||||||| ||||| |||||||| ||| || ||| || | Sbjct 3800 CGATGAAGTGGTTGCCGCCACCCAGCGTGCCCAGCTGGCGGTCGAGCTTGTCGGT----- 3746 Query 136171 GCGCCGGGTACTTCTCGCAGAGCTTGTCGAACCGCGCCTCCAGGCCCGAGTCGACCC--- 136227 ||| | || || | || |||| | ||||||||| | | | | || Sbjct 3745 ---GCGGATTCT----GCGGTGCCTGTCCTTGATCTTCTCCAGGCCGGCGGCCAGCCCGG 3693 Query 136228 ACTTGCGCAGGATCGAGTTGGGGATGCCGCTGCGC--CCGTTCCAGCCGCCCGACGGACC 136285 ||| ||| || | | || |||||| | | || || | | || || || || Sbjct 3692 ACT---GCACGAGCCGGGTGTGGATGCTGTCGGGCATGCGGT---GATGCTCGCCG--CC 3641 Query 136286 CGGCCC---GCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGACAGGCTGTC 136342 |||| |||| ||| | | | ||||||| ||| |||| |||| || Sbjct 3640 ACGCCCATTGCCGACCGGAATGCTGCGCTCGATGCTGTTGCGCAGCTGCCGCAGGTCATC 3581 Query 136343 GGGAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGAC 136402 ||| ||||| ||| ||| ||||||| || ||| ||||||||||||||||||||| Sbjct 3580 GGGCAGGTCGTTGGCGCGCAGCGTGGTGCGTACGGCCGCCATGCCGCAGCCGATGTCGAC 3521 Query 136403 GCCGACGGCGGCCGGGATGATCGCGCC 136429 |||||| ||||||||||||||||| || Sbjct 3520 GCCGACTGCGGCCGGGATGATCGCACC 3494 >seq26881 Length=441 Score = 197 bits (218), Expect = 2e-45 Identities = 308/431 (71%), Gaps = 11/431 (3%) Strand=Plus/Minus Query 135776 CTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGGC--GGCAGG 135833 ||| ||||||||||||||||||||||| |||||| | ||||| ||||||| || Sbjct 438 CTGCACGTAGTTGTGGTGGCAGTTCACGGCTTCCACATGCGTCTCGAACGGCTTGGTGAT 379 Query 135834 CCCGACGCCCGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCG-C 135892 | | || ||| || | | || ||| ||||||||| |||||||||| | ||| | Sbjct 378 CACTTTGC--GCAGCGCGGCGATCACGCGGCCCATCATCACCTCGCGGTTGG-CTGCGGC 322 Query 135893 GAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGGTTCGCCTTCGCA 135952 ||| | ||| |||| | ||||| | |||||||||| || | | | ||||||| Sbjct 321 GAATTTCTGCGCCCACCCCACGGCCTTCACGTAGTCGCCAAAGTACTGCGCGCCTTCCTC 262 Query 135953 GAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGCCGCAGCATCATCTCCTT 136012 || | || ||||||||||| || | |||||| || | | | || || || ||| Sbjct 261 GAAGTACGCCAGGTCCTTGTCGGGCAGGTTGCGCTGGTT-CATCTCGGCGTC--CTTCTT 205 Query 136013 GGCCTTCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAG 136072 |||| |||||||||| |||||||| ||| || || || ||||| |||||||| || Sbjct 204 GGCCAGCTCGATGAAGTGGGTGCCGATGGCGTTCCCCACCCCACGCGATCCCGAGTGCAG 145 Query 136073 CATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCC 136132 ||||||||| ||| ||||| ||||| ||||||| ||||||||||||||| || || Sbjct 144 CATCACCCACACGGACTGGTGTTCGTCCAGGCAGATCTCGATGAAGTGGTTACCCGTTCC 85 Query 136133 CAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCA-GCGCCGGGTACTTCTCGCAGA 136191 || || ||||| || | |||| | |||||| | ||| ||| | | ||||||| Sbjct 84 GAGCGTTCCCAGGTGCTTGTAGTTGTTCGTGTTCTTGATGCG-CGGATGCGCTTCGCAGA 26 Query 136192 GCTTGTCGAAC 136202 || ||||||| Sbjct 25 TCTCGTCGAAC 15 >seq10019 Length=1432 Score = 123 bits (136), Expect = 3e-23 Identities = 386/588 (66%), Gaps = 21/588 (4%) Strand=Plus/Plus Query 82114 TCGTCGCGGATCGACCACTCGACGATCGTGGTCATGCCCTTCATGCGGTTGCGGCGCTGG 82173 |||||||| | ||||| ||||||| | |||||||||||| |||| |||| || Sbjct 429 TCGTCGCGCACGGACCAGCTGACGATCTGGCCCATGCCCTTCATCTTGTTGAAGCGCGGG 488 Query 82174 AAGGACATCAGCAGGGCGAAGGACGAGAAAAGCTGCATCCCCTCGCCGAAGGCCGAGAAC 82233 ||| |||||||| ||||| || | ||| ||||| | ||||||| ||| | |||| Sbjct 489 AAGTTCATCAGCATCGCGAACGATGCGAACAGCTGAAGCCCCTCGGTAAAGCCGCCGAAC 548 Query 82234 ACGGCGATG---TCGACCATCAGGTCGGCG--ATCGAGTTGCCGCTGTCCCGATTGAACA 82288 | ||||| | | | | || ||| | ||||| |||| | | || | Sbjct 549 ATGGCGAGGGTCTTGGCGATATCCTCGTCATTATCGAC--GCCGAACTGCTGA------A 600 Query 82289 TGTACTCGTGCTTTTCGCGCATCGCCTCGTAGTCGAGGAAGGCGCGGAACTCGACCTCGG 82348 ||| |||||||| || |||| | | || |||||||| || | ||| |||| Sbjct 601 GGTAATCGTGCTTGTCCTTCATCTCGGCATATTCGAGGAACATGCCATATTCGCTTTCGG 660 Query 82349 GCAGGCCCAGGGTGTCGATCAGCGTCGA-GTAGGCGTCGATGTGGTTGGCCTCGGCGGCG 82407 ||| ||| | ||||||| ||| || | |||||| ||||||| | || | | Sbjct 661 GCATGCCGATCGTGTCGAGCAG-GTGGCTGTAGGCCGCGATGTGCACCGTTTCCATGTTG 719 Query 82408 ATGAACGCGCCCAGCATCATCCGCACTTCCGGGTGCGGGAAG-CGCGGGCCGTACTTCTC 82466 ||| ||| | ||||||||| | || | || ||| ||||| ||||| || || Sbjct 720 GAGAAGGCGGCGAGCATCATCTTGATCTCGGTCGGCTTGAACACGCGG-CCGTATTTTTC 778 Query 82467 GAAGTAGCCGCGCGCCACGTCGACGTCGGCCTGGGTGAAGAACCGGAAGAGTTGCGTCAG 82526 | ||||| | ||| ||||| || ||||| |||||||| ||||||| || ||||| Sbjct 779 GTGGTAGCAATCCTGCACCTCGACATCCGCCTGCGTGAAGAAGCGGAAGATCTGGGTCAG 838 Query 82527 CAGG--GACTTCTCGTTCGGCGTCAGCTTCTCGTTCCAGTCCTGGATGTCCTGGTCCATG 82584 ||| | ||| | |||| | ||||| | |||||| || |||| ||| Sbjct 839 CAGATTGCGTTCATGGTCGGTG--AGCTTTTGCGCCCAGTCGCGGCAATCCTCTCCCAGC 896 Query 82585 GGGGCTTCGTGCGGAAGCCAGTGCATGGCCTGCATGGTCTTGTAGGCCTCATAGGCCCAG 82644 || | || | || |||||||| || |||| ||| || ||||||||||||| Sbjct 897 GGCACCTCTTCGGGCAGCCAGTGGATCTGCTGCTGACGCTTCCAGAACTCATAGGCCCAG 956 Query 82645 GGGTAGACGAACGGCTTGTAGTAGTCGCGGGACTTGAGCAGGGACATG 82692 || || |||||||||||||| | ||||| | ||| || | |||| Sbjct 957 GGATATTCGAACGGCTTGTAGGTCTTGCGGGCTTCGAGAAGAGGCATG 1004 >seq8325 Length=1725 Score = 86.0 bits (94), Expect = 9e-12 Identities = 86/108 (80%), Gaps = 3/108 (3%) Strand=Plus/Plus Query 127326 CTTGCCCGGATCGGTGATCGGGTCCTTGTAGATTTCGACCCACTCGCCGTTGATCTCCTG 127385 |||||| | |||||||| ||| |||||||| | ||||||||||| |||| || | | || Sbjct 484 CTTGCCGGCATCGGTGACCGGATCCTTGTATACATCGACCCACTCACCGTCGA-CCCGTG 542 Query 127386 -GGCCGAGGACTTCATCGCCCACTTGTTGGTGTCGCGGTCCAGGTCGC 127432 |||||| |||||| ||| |||| | ||||||||||||| ||||| Sbjct 543 CCGCCGAGCACTTCAGCGCGAACTTCTGCGTGTCGCGGTCCA-GTCGC 589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700133636153160