Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq1923 385 7e-102 seq14750 273 3e-68 seq26881 196 7e-45 seq10019 159 5e-34 seq1292 127 3e-24 >seq1923 Length=5946 Score = 385 bits (426), Expect = 7e-102 Identities = 673/959 (70%), Gaps = 38/959 (4%) Strand=Plus/Minus Query 139616 GTCGGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCC--CCCATCGAGCCGGGGATG 139673 ||||||||||||||||||||||||||||||| || || ||||| |||||| ||| Sbjct 4270 GTCGGCGTTGCCCTTGCCGCGCACGATGTAG--CTGCGCGTGCCCATGCTGCCGGGAATG 4213 Query 139674 ATGCCGAACTGGTCCTTCT-GAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTC 139732 ||||| | || | ||||| | || || || ||||| |||||||| | | || Sbjct 4212 ATGCCCAGCTCG-CCTTCGCGGGCACTGACGGCCCCCTTCCGGGTCACCAGCAGTTCCTG 4154 Query 139733 GTCGAAGTGGAACTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCT-TCCTTGTCCG 139791 | || ||| |||||||| |||||||||||||||||||||||||| || || | | Sbjct 4153 GCCGTGGTGCGTTTCCTTCTGCACGTAGTTGTGGTGGCAGTTCACCGCCATCGCTGCCAG 4094 Query 139792 TCTTGAAGGGCGGCAGGCCCGAGGCGCGCATGGCGTCCAGGACCCGGATCATCATCATCT 139851 || ||| ||||| || | |||||| || |||| || || ||||||| || Sbjct 4093 -CTGGAACTTCGGCAAGCG---GTGGCGCATCTCGGCCAGCACGCGCGACATCATCGCCT 4038 Query 139852 CGCGGTTGATCCGCGCGAAGTCCTGACCCCAGGCGACGGCTTCCACGTAGTCGTAGAATT 139911 ||||||| ||| ||| ||||||| |||| | |||||||| |||||||| | ||| Sbjct 4037 CGCGGTTCTGCCGGGCGTAGTCCTGCGCCCACGACACGGCTTCGACGTAGTCATCGAACA 3978 Query 139912 CCGGCTCGCCTTCCGACAGCCACGCGAGGTCCTTGTCGAGCGGCTTCTGACCGTCCCGAC 139971 ||||||||||||| | |||| ||||||||||| || | | ||| | | Sbjct 3977 GCGGCTCGCCTTCCATGAAGAACGCCAGGTCCTTGTCCGGCAGGTGGAAGCCGAGCACGC 3918 Query 139972 GCAGCATCATCTCCTTG---GCCTTCTCGATGAAGATACG-GCCGATGGTGTTGCCGACG 140027 || | || |||| | ||||||||||||||| || | |||||| ||||||| | Sbjct 3917 GCCGGGCCAGTTCCTCGCGCGCCTTCTCGATGAAG-TAGGTGCCGATCAGGTTGCCGGTG 3859 Query 140028 CCGCGCGAGCCCGAGTGGAGCATCACCCAGAC-GCGCTGGTCCTCGTCGAGGCAGACCTC 140086 |||||||| || ||| ||||||||||| || | | |||| ||||| ||||| | || Sbjct 3858 CCGCGCGATCCGCTGTGCAGCATCACCCACACCGTGTCGGTC-TCGTCCAGGCACAGTTC 3800 Query 140087 GATGAAGTGGTTGCCGCCGCCCAGCGTGCCCAGTTGGACGACGCTGTTGGCGTTCTTGAG 140146 |||||||||||||||||| |||||||||||||| ||| | || ||| || | || Sbjct 3799 GATGAAGTGGTTGCCGCCACCCAGCGTGCCCAGCTGGCGGTCGAGCTTGTCGGTGCGGAT 3740 Query 140147 GGTCTTGTACTTGTCGCAGAGCTTCTCGAACCGGGCTTCCAGGCCCGAGT---CGACCCA 140203 | || | |||| || |||||| | | ||| |||| || || | ||| || Sbjct 3739 TCTGCGGTGCCTGTCCTTGATCTTCTCCAGGCCGGCGGCCAGCCCGGACTGCACGAGCCG 3680 Query 140204 CTTGCGCATGATCGAGTTCGGGATGCCGCTACGCCCGTTCCAGCCGCCCGACGGACCCGG 140263 || | ||| | || || |||| | | || || ||||| ||| ||| Sbjct 3679 GGTGTGGATGCT---GTCGGGCATGCGGTGATGCTCG------CCGCC--ACG--CCCAT 3633 Query 140264 CCCGCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGCAGCTTGGCG-AGGCTGTCGGGCA 140322 |||| ||| | | | ||||||| |||||||| | || ||| ||||||| Sbjct 3632 T--GCCGACCGGAATGCTGCGCTCGATGCTGTTGCGCAGCT-GCCGCAGGTCATCGGGCA 3576 Query 140323 GGTCCGAGGCCTTCAGCGAGGTGCGCACGGCCATCATGCCGCAGCCGATGTCCACGCCCA 140382 |||| ||| ||||| |||||| |||||| |||||||||||||||||| ||||| | Sbjct 3575 GGTCGTTGGCGCGCAGCGTGGTGCGTACGGCCGCCATGCCGCAGCCGATGTCGACGCCGA 3516 Query 140383 CGGCCGCCGGGATGATGGCGCCCTTGGTCGGGATCACCGAGCCCACGGTCGAGCCGATGC 140442 | || ||||||||||| || || |||||||||||||||||| ||||||| ||| ||| Sbjct 3515 CTGCGGCCGGGATGATCGCACCGCGGGTCGGGATCACCGAGCCGACGGTCGCGCCCTTGC 3456 Query 140443 CCATGTGGACGTCCGGCATCAGGGCCACATGCGAGTGGATGAACGGCAGGGCGGCGAGGT 140502 ||| ||| ||||||||||||| |||||| || | |||||| | ||||||| || Sbjct 3455 CCAGGTGCACGTCCGGCATCACGGCCACCCACGGCCCAACGAACGGGATCGCGGCGATGT 3396 Query 140503 TGTGCGCCTGCACCTGGGCGGGCTGCTCGAAGGTCACACCCCGGACCCAGGCCTTGATC 140561 || || |||| | || || || || | | |||||| ||||||| |||||||| Sbjct 3395 TGCGCAGCTGCTCATGCGCCTGCGCTTCCAGCGGCACACCGTTGACCCAGCCCTTGATC 3337 >seq14750 Length=960 Score = 273 bits (302), Expect = 3e-68 Identities = 372/510 (73%), Gaps = 18/510 (4%) Strand=Plus/Minus Query 139616 GTCGGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGAT 139675 ||| |||||||||||||||||||||||| || ||| || ||||| |||||| ||||| Sbjct 506 GTCCGCGTTGCCCTTGCCGCGCACGATGAAGCTCTTCGCGCCCATGCTGCCGGGAATGAT 447 Query 139676 GCCGAACTGGTCCTTCTGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTC 139735 || | || | | | || |||||| ||||||||||| || | | | |||| | Sbjct 446 CCCCAGCTCGCCAGCACGCGCGCTCACCGCACCCTTGCGGGTGACCAGCAGCTCCTCGCC 387 Query 139736 GAAGTGGAACTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTT 139795 ||| ||||||||| |||||||||||||||||||| ||||| ||| ||| || Sbjct 386 ACCGTGCGTCTCCTTCTGCACGTAGTTGTGGTGGCAGTTGACCGCCATCTTTTCCAGCTG 327 Query 139796 GAAGGGCGGCAGGCCCGAGGCGCGCATGGCGTCCAGGACCCGGATCATCATCATCTCGCG 139855 ||| |||||||| | |||||| || |||| || || ||||||| |||||| Sbjct 326 GAACTTCGGCAGGCG---GTGGCGCATCTCGGCCAGCACGCGCGACATCATCGCCTCGCG 270 Query 139856 GTTGATCCGCGCGAAGTCCTGACCCCAGGCGACGGCTTCCACGTAGTCGTAGAATTCCGG 139915 ||| || ||| ||||||| |||||| |||||| ||||||||||||| ||| ||| Sbjct 269 GTTCTCGCGGGCGTAGTCCTGCGCCCAGGAGACGGCCTCCACGTAGTCGTCGAACAGCGG 210 Query 139916 CTCGCCTTCCGACAGCCACGCGAGGTCCTTGTCGAGCGGCTTCTG--ACCGTCCCG-ACG 139972 |||||| ||| | | || ||||||||||| |||| || ||| || | ||| Sbjct 209 CTCGCCCTCCATGAAGAAGGCCAGGTCCTTGTC---CGGCAGGTGGAACC--CCAGCACG 155 Query 139973 C--AGCATCATCTCCTTG---GCCTTCTCGATGAAGATACG-GCCGATGGTGTTGCCGAC 140026 | || || | || | ||| |||||||||| || | |||||| ||||||| Sbjct 154 CGATGCGCCAATTGCTCGCGAGCCCGCTCGATGAAG-TAGGTGCCGATCAGGTTGCCGGT 96 Query 140027 GCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTC 140086 ||||||||||| ||| ||||||||||||||| | | ||||||||||||| ||| Sbjct 95 ACCGCGCGAGCCGCTGTGCAGCATCACCCAGACGGCATCGCTTTCGTCGAGGCAGAGCTC 36 Query 140087 GATGAAGTGGTTGCCGCCGCCCAGCGTGCC 140116 ||||||||||||||||||||| |||||||| Sbjct 35 GATGAAGTGGTTGCCGCCGCCGAGCGTGCC 6 >seq26881 Length=441 Score = 196 bits (216), Expect = 7e-45 Identities = 284/396 (72%), Gaps = 5/396 (1%) Strand=Plus/Minus Query 139751 CTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAAGGGCGGCAGGCC 139810 ||| ||||||||||||||||||||||| |||||| | ||||| ||| ||| | Sbjct 438 CTGCACGTAGTTGTGGTGGCAGTTCACGGCTTCCACATGCGTCTCGAACGGCTTGGTGAT 379 Query 139811 CGAGGCGCGCATGGCGTCCAGGACCCGGATCATCATCATCTCGCGGTTGATCCGCG-CGA 139869 | ||||| ||| | | || ||| |||||||| |||||||||| | ||| ||| Sbjct 378 CACTTTGCGCAGCGCGGCGATCACGCGGCCCATCATCACCTCGCGGTTGG-CTGCGGCGA 320 Query 139870 AGTCCTGACCCCAGGCGACGGCTTCCACGTAGTCGTAGAATTCCGGCTCGCCTTCCGACA 139929 | | ||| |||| | ||||| | |||||||||| || | | || |||||||| | Sbjct 319 ATTTCTGCGCCCACCCCACGGCCTTCACGTAGTCGCCAAAGTACTGCGCGCCTTCCTCGA 260 Query 139930 GCCACGCGAGGTCCTTGTCGAGCGGCTTCTGACCGTCCCGACGCAGCATCATCTCCTTGG 139989 |||| |||||||||||| || | || | || | | | || || || ||||| Sbjct 259 AGTACGCCAGGTCCTTGTCGGGCAGGTTGCGCTGGTTCAT-CTCGGCGTC--CTTCTTGG 203 Query 139990 CCTTCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCA 140049 || |||||||||| |||||||| ||| || || || ||||| |||||||| |||| Sbjct 202 CCAGCTCGATGAAGTGGGTGCCGATGGCGTTCCCCACCCCACGCGATCCCGAGTGCAGCA 143 Query 140050 TCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCA 140109 ||||||| ||| ||||| ||||| ||||||| ||||||||||||||| || || | Sbjct 142 TCACCCACACGGACTGGTGTTCGTCCAGGCAGATCTCGATGAAGTGGTTACCCGTTCCGA 83 Query 140110 GCGTGCCCAGTTGGACGACGCTGTTGGCGTTCTTGA 140145 |||| ||||| || | | |||| | |||||||| Sbjct 82 GCGTTCCCAGGTGCTTGTAGTTGTTCGTGTTCTTGA 47 >seq10019 Length=1432 Score = 159 bits (176), Expect = 5e-34 Identities = 618/947 (65%), Gaps = 42/947 (4%) Strand=Plus/Plus Query 83146 CGCCCTTGCCGTACTCGGTCGAGCGCTGCTCGAAGAAGTTGGCGTGGGTCGGGGC-GTTC 83204 ||||||| || ||||||| ||| ||||||||||||||||| ||| || ||| Sbjct 82 CGCCCTTCGAATATTCGGTCGCGCGGGTTTCGAAGAAGTTGGCGTGT-TCGACGCCGTTG 140 Query 83205 ATGATCCAGTCGAGCCAGTCGAAGGGGTTCTCCTTCTGGCC-GTAGTTGGGCTTCATGCC 83263 | | | |||||| | ||||| | | | || | |||| | ||||||| ||| Sbjct 141 AGCAGCGGCGTGAGCCACG-GCAGGGGGTGTTCGTCGATCATGTAGATCGGCTTCAGGCC 199 Query 83264 CAGTTGCAGCCACCGGCGGTCGGCGATGTAGCGGATGTACTTCTTGGTGTCCTCGGGCGT 83323 ||| || | || | |||||||||||||||||| ||||||||| | |||| |||||| Sbjct 200 CAGCTGGTTCAGGCGCCAGTCGGCGATGTAGCGGATATACTTCTTGATCTCCTTGGGCGT 259 Query 83324 GACGCCGTCGACCTCGCCCAGGGCGAAGGCTTGGTCGATGAAGGCGTCTTCCAGGTCGAC 83383 | |||| |||| |||| | |||| || |||||||||| || || || || || Sbjct 260 CATGCCGGGGACCGGGCCCTGTTCGAACGCCAGGTCGATGAACGCATCCTCGAGCCGCAC 319 Query 83384 CATCCGGCGGCCGGCGTCGTAGATG-CG--CTTCTTGGTCTCGTCGTTCCAGGCGCGCGG 83440 || ||| | |||| |||| || |||| | || | || ||||| || Sbjct 320 GGTCGTCTGGCAGACGTCCATGATGTCGTCCTTCACAGCCT--TGGT--CAGGCAGTCGC 375 Query 83441 GTGCTCCTTGATCAACTCGTGCAGGAGCTTGATCATGCTCTCGACGTGGTGGGTCTCGTC 83500 || |||||| | || |||| | || | | |||| ||| ||| | | ||||| Sbjct 376 GT--TCCTTGGTGAAGGCGTGGAACAGGCGGGTGATGCCTTCGCAGTGCAGCGATTCGTC 433 Query 83501 GCGGATCGACCACTCGACGATCGTGGTCATGCCCTTCATCAGGCCGCGCCGCTGGTAGTT 83560 ||| | ||||| ||||||| | ||||||||||||| | | ||| || |||| Sbjct 434 GCGCACGGACCAGCTGACGATCTGGCCCATGCCCTTCATCTTGTTGAAGCGCGGGAAGTT 493 Query 83561 CATCAGCAGGGCGAACGAGGAGAAAAGCTGCATGCCTTCGCCGAAGGCCGAGAACACGGC 83620 |||||||| |||||||| | ||| ||||| | || ||| ||| | ||||| ||| Sbjct 494 CATCAGCATCGCGAACGATGCGAACAGCTGAAGCCCCTCGGTAAAGCCGCCGAACATGGC 553 Query 83621 GA---TGTCGACGATCAGGTCGGC--GATCGACGTGCCGCTCTCGCGCTCGAACATGTAC 83675 || | | | |||| ||| | |||||| |||| || ||| || | ||| Sbjct 554 GAGGGTCTTGGCGATATCCTCGTCATTATCGAC--GCCGAACT---GCT-GA--AGGTAA 605 Query 83676 TCGTGCTTTTCACGCATCGCCTGATAGTCCAGGAAGGCGCGGAACTCGACCTCGGGCAGG 83735 |||||||| || |||| | ||| || ||||| || | ||| ||||||| | Sbjct 606 TCGTGCTTGTCCTTCATCTCGGCATATTCGAGGAACATGCCATATTCGCTTTCGGGCATG 665 Query 83736 CCCAGGGTGTCGATCAGGGTGGC-GTAGGCGNNNNNNNNNNNNNNNTCGGCCGCCATGAA 83794 || | ||||||| || |||||| |||||| || ||| Sbjct 666 CCGATCGTGTCGAGCA-GGTGGCTGTAGGCCGCGATGTGCACCGTTTCCATGTTGGAGAA 724 Query 83795 CGAGGCCAGCATCATCCGCACCTCCGGGTGCGGGAA-GCGCGGGCCGTACTTTTCGAAGT 83853 | ||| ||||||||| | ||| | || ||| ||| ||||||| |||||| || Sbjct 725 GGCGGCGAGCATCATCTTGATCTCGGTCGGCTTGAACACGC-GGCCGTATTTTTCGTGGT 783 Query 83854 AGCCGCGCGCCACATCGACGTCGGCCTGGGTGAAGAAGCGGAAGAGTTGCGTAAGCTGGT 83913 ||| | ||| ||||| || ||||| |||||||||||||||| || || ||| | | Sbjct 784 AGCAATCCTGCACCTCGACATCCGCCTGCGTGAAGAAGCGGAAGATCTGGGTCAGCAGAT 843 Query 83914 T--CTTCTCGCTGGGCTTGAGCTTCTCGTTCCAGTCCTGGATGTCGGTGTCCATCGGCGC 83971 | ||| | | || ||||||| | |||||| || || ||| |||| | Sbjct 844 TGCGTTCATGGTCGG--TGAGCTTTTGCGCCCAGTCGCGGCAATCCTCTCCCAGCGGCAC 901 Query 83972 CTCGTGGGGGAGCCAGTGGAGCGATTGCATGATCCGGT---AGGCGTCGTAGGCCCAGGG 84028 ||| | ||| |||||||||| | ||| ||| || | || || ||||||||||| Sbjct 902 CTCTTCGGGCAGCCAGTGGATCTGCTGC-TGA--CGCTTCCAGAACTCATAGGCCCAGGG 958 Query 84029 GTAGGCGAAGGGCTTGTAGTAGTCGCGCGGCTT-GAGCAGGGACATG 84074 || |||| ||||||||| | ||| ||||| ||| || | |||| Sbjct 959 ATATTCGAACGGCTTGTAGGTCTTGCG-GGCTTCGAGAAGAGGCATG 1004 >seq1292 Length=7958 Score = 127 bits (140), Expect = 3e-24 Identities = 94/110 (85%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 140365 AGCCGATGTCCACGCCCACGGCCGCCGGGATGATGGCGCCCTTGGTCGGGATCACCGAGC 140424 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 AGCCGATGTCCACGCCCACGGCCGCCGGGATGATGGCCTTGATGGTCGGGATCACCGAGC 60 Query 140425 CCACGGTCGAGCCGATGCCCATGTGGACGTCCGGCATCAGGGCCACATGC 140474 ||||||| | ||| ||||||| ||| ||||| ||||| || |||||| Sbjct 61 CCACGGTGGCGCCTATGCCCAGGTGCACGTCGGGCATGGCTGCGACATGC 110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715458025459200