Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq14750 316 3e-81 seq1923 288 1e-72 seq26881 201 2e-46 seq10019 120 4e-22 seq8325 86.0 9e-12 >seq14750 Length=960 Score = 316 bits (350), Expect = 3e-81 Identities = 465/647 (72%), Gaps = 22/647 (3%) Strand=Plus/Minus Query 137305 TTCGTCGATCACGCCGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTC 137364 ||||||||||||||| |||||||||||||| || ||| | | ||||||| | || | Sbjct 641 TTCGTCGATCACGCCCGCGTCCTTGCGGCATTCGACGTGCGCCGTGGCCTCGCGGTGCTG 582 Query 137365 CTCCAGAGTGAAGGTCGCCTTGGCCTG----GGTCCGCGACATCGTCCGGCCCGCGCCGT 137420 | ||| |||| || || ||| || ||| || || | ||||| ||||||| Sbjct 581 CGACAGCGTGA---TCTGCT-GGCGTGCGGCGGTACGGCTCAGCACGCGGCCGGCGCCGT 526 Query 137421 GCGAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCC 137480 | ||| | ||| |||||| ||||||||||||||||||||| || ||| || | Sbjct 525 GGCTGCAGCTGTGGAAGCTGTCCGCGTTGCCCTTGCCGCGCACGATGAAGCTCTTCGCGC 466 Query 137481 CCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGG 137540 |||| |||||| |||||||| | || | | |||| |||||| |||||||||| Sbjct 465 CCATGCTGCCGGGAATGATCCCCAGCTCGCCAGCACGCGCGCTCACCGCACCCTTGCGGG 406 Query 137541 TCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCA 137600 | || | | | |||| | ||| |||||||| |||||||||||||||||||| | Sbjct 405 TGACCAGCAGCTCCTCGCCACCGTGCGTCTCCTTCTGCACGTAGTTGTGGTGGCAGTTGA 346 Query 137601 CCGCTTCCTTGTCCGTCTTGAACGGCGGCAGGCCCGACGCCCGCATGGCCTCCAGGACCC 137660 |||| ||| ||| || |||| ||||||| || | ||||| | |||| || | Sbjct 345 CCGCCATCTTTTCCAGCTGGAACTTCGGCAGG--CGGTG-GCGCATCTCGGCCAGCACGC 289 Query 137661 GGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCA 137720 | ||||||| ||||||||| || ||| ||||||| |||||| |||||| |||| Sbjct 288 GCGACATCATCGCCTCGCGGTTCTCGCGGGCGTAGTCCTGCGCCCAGGAGACGGCCTCCA 229 Query 137721 CGTAGTCGTGGAACTCCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCT 137780 ||||||||| |||| ||||||||| || || | || |||||||||||| || | | Sbjct 228 CGTAGTCGTCGAACAGCGGCTCGCCCTCCATGAAGAAGGCCAGGTCCTTGTCCGGCAGGT 169 Query 137781 TG-CGCCCGTCACGGCGCAGCATCATCTCCTTG---GCCTTCTCGATGAAGATGCGGCCG 137836 | ||| ||| ||| || || | || | ||| |||||||||| | |||| Sbjct 168 GGAACCCCAGCAC-GCGATGCGCCAATTGCTCGCGAGCCCGCTCGATGAAGTAGGTGCCG 110 Query 137837 ATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCTGATC---C 137893 || ||||||| ||||||||||| ||| ||||||||||||||| || ||| Sbjct 109 ATCAGGTTGCCGGTACCGCGCGAGCCGCTGTGCAGCATCACCCAGACG-GC--ATCGCTT 53 Query 137894 TCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCC 137940 ||||||||||||| |||||||||||||||||||||||| || ||||| Sbjct 52 TCGTCGAGGCAGAGCTCGATGAAGTGGTTGCCGCCGCCGAGCGTGCC 6 >seq1923 Length=5946 Score = 288 bits (318), Expect = 1e-72 Identities = 645/943 (68%), Gaps = 52/943 (6%) Strand=Plus/Minus Query 137306 TCGTCGATCACGCCGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCC 137365 ||||| | ||||||| |||||||||||| |||||| | ||||||||| | || | Sbjct 4404 TCGTCCAGCACGCCGCTGTCCTTGCGGCATTCCACGTGCGCGGTGGCCTCGCGGTGCTGG 4345 Query 137366 TCCAGAGTGAAGGTCGCCTTGGCCTGGGT-CCGCGAC--ATCGTCCGGCCCGCGCCGTGC 137422 |||| |||| || || | | || || || | ||| |||||| || ||||| Sbjct 4344 GCCAGCGTGA---TCTGCTGGCGCGCCGTGCCACGGCTCATCACCCGGCCGGCCCCGTGG 4288 Query 137423 GAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCC--C 137480 ||| | ||| ||| || |||||||||||||||||||||||| || || | Sbjct 4287 CTGCAGCTGTGGAAGCTGTCGGCGTTGCCCTTGCCGCGCACGATGTAG--CTGCGCGTGC 4230 Query 137481 CCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGAC--ACCGCGCCCTTGCG 137538 |||| |||||| ||||| || | || | ||||| ||| || || || ||||| || Sbjct 4229 CCATGCTGCCGGGAATGATGCCCAGCTCG-CCTTC-GCGGGCACTGACGGCCCCCTTCCG 4172 Query 137539 GGTCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTT 137598 |||||| | | || | || ||| ||||||||| |||||||||||||||||||| Sbjct 4171 GGTCACCAGCAGTTCCTGGCCGTGGTGCGTTTCCTTCTGCACGTAGTTGTGGTGGCAGTT 4112 Query 137599 CACCGCT-TCCTTGTCCGTCTTGAACGGCGGCAGGCCCGACGCCCGCATGGCCTCCAGGA 137657 |||||| || || | | || |||| ||||| || | || |||| | |||| | Sbjct 4111 CACCGCCATCGCTGCCAG-CTGGAACTTCGGCAAGCG-GTGGC--GCATCTCGGCCAGCA 4056 Query 137658 CCCGGACCATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTT 137717 | || ||||||| ||||||||| ||| ||| ||||||| |||| | ||||||| Sbjct 4055 CGCGCGACATCATCGCCTCGCGGTTCTGCCGGGCGTAGTCCTGCGCCCACGACACGGCTT 3996 Query 137718 CCACGTAGTCGTGGAACTCCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCG 137777 | |||||||| | |||| |||||||||||| || | || |||||||||||| || Sbjct 3995 CGACGTAGTCATCGAACAGCGGCTCGCCTTCCATGAAGAACGCCAGGTCCTTGTCCGGCA 3936 Query 137778 GCTTGCGCCCGT-CACGGCGCAGCATCATCTCCTTG---GCCTTCTCGATGAAGATGCGG 137833 | | | ||| |||| ||| | || |||| | ||||||||||||||| | | Sbjct 3935 GGTGGAAGCCGAGCACG-CGCCGGGCCAGTTCCTCGCGCGCCTTCTCGATGAAGTAGGTG 3877 Query 137834 CCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGAC-GCGCTGATC 137892 ||||| ||||||| ||||||||| || ||| ||||||||||| || | | | || Sbjct 3876 CCGATCAGGTTGCCGGTGCCGCGCGATCCGCTGTGCAGCATCACCCACACCGTGTCGGTC 3817 Query 137893 CTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCAC 137952 ||||| ||||| | |||||||||||||||||||| ||||| |||||||| ||| | Sbjct 3816 -TCGTCCAGGCACAGTTCGATGAAGTGGTTGCCGCCACCCAGCGTGCCCAGCTGGCGGTC 3758 Query 137953 GCTGTTGGCGTT----CTTCAGCGCCGGGTACTTCTCGCAGAGCTTGTCGAACCGCGCCT 138008 | ||| || | ||| || ||| | | || || ||| || | | || Sbjct 3757 GAGCTTGTCGGTGCGGATTCTGC----GGTGCCTGTCCTTGATCTTCTCCAGGCCGGCGG 3702 Query 138009 CCAGGCCCGAAT---CGACCCACTTGCGCAGGATCGAGTTGGGGATGCCGCTGCGCCCGT 138065 |||| || || | ||| || || |||| || ||| ||| || || | Sbjct 3701 CCAGCCCGGACTGCACGAGCCGGGTG---TGGATGCTGTCGGGCATG-CGGTG-----AT 3651 Query 138066 TCCAGCCGCCCGACGGACCCGGCCCGCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGAA 138125 | |||||| ||| ||| |||| ||| | | | ||||||| ||| | Sbjct 3650 GCTCGCCGCC--ACG--CCC--ATTGCCGACCGGAATGCTGCGCTCGATGCTGTTGCGCA 3597 Query 138126 GCTTGGACAGGCTGTCGGGGAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGC 138185 ||| |||| ||||| ||||| ||| ||| ||||||| || ||| ||||| Sbjct 3596 GCTGCCGCAGGTCATCGGGCAGGTCGTTGGCGCGCAGCGTGGTGCGTACGGCCGCCATGC 3537 Query 138186 CGCAGCCGATGTCGACGCCGACGGCGGCCGGGATGATCGCGCC 138228 |||||||||||||||||||||| ||||||||||||||||| || Sbjct 3536 CGCAGCCGATGTCGACGCCGACTGCGGCCGGGATGATCGCACC 3494 >seq26881 Length=441 Score = 201 bits (222), Expect = 2e-46 Identities = 309/431 (72%), Gaps = 11/431 (3%) Strand=Plus/Minus Query 137575 CTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGGC--GGCAGG 137632 ||| ||||||||||||||||||||||| |||||| | ||||| ||||||| || Sbjct 438 CTGCACGTAGTTGTGGTGGCAGTTCACGGCTTCCACATGCGTCTCGAACGGCTTGGTGAT 379 Query 137633 CCCGACGCCCGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCG-C 137691 | | || ||| || | | || ||| ||||||||| |||||||||| | ||| | Sbjct 378 CACTTTGC--GCAGCGCGGCGATCACGCGGCCCATCATCACCTCGCGGTTGG-CTGCGGC 322 Query 137692 GAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGGCTCGCCTTCGCA 137751 ||| | ||| |||| | ||||| | |||||||||| || | | || ||||||| Sbjct 321 GAATTTCTGCGCCCACCCCACGGCCTTCACGTAGTCGCCAAAGTACTGCGCGCCTTCCTC 262 Query 137752 GAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGGCGCAGCATCATCTCCTT 137811 || | || ||||||||||| || | |||||| || | | | || || || ||| Sbjct 261 GAAGTACGCCAGGTCCTTGTCGGGCAGGTTGCGCTGGTT-CATCTCGGCGTC--CTTCTT 205 Query 137812 GGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAG 137871 |||| |||||||||| | |||||||| ||| || || || ||||| |||||||| || Sbjct 204 GGCCAGCTCGATGAAGTGGGTGCCGATGGCGTTCCCCACCCCACGCGATCCCGAGTGCAG 145 Query 137872 CATCACCCAGACGCGCTGATCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCC 137931 ||||||||| ||| ||| | ||||| ||||||| ||||||||||||||| || || Sbjct 144 CATCACCCACACGGACTGGTGTTCGTCCAGGCAGATCTCGATGAAGTGGTTACCCGTTCC 85 Query 137932 CAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCA-GCGCCGGGTACTTCTCGCAGA 137990 || || ||||| || | |||| | |||||| | ||| ||| | | ||||||| Sbjct 84 GAGCGTTCCCAGGTGCTTGTAGTTGTTCGTGTTCTTGATGCG-CGGATGCGCTTCGCAGA 26 Query 137991 GCTTGTCGAAC 138001 || ||||||| Sbjct 25 TCTCGTCGAAC 15 >seq10019 Length=1432 Score = 120 bits (132), Expect = 4e-22 Identities = 385/588 (65%), Gaps = 21/588 (4%) Strand=Plus/Plus Query 83523 TCGTCGCGGATCGACCACTCGACGATCGTGGTCATGCCCTTCATGCGGTTGCGGCGCTGG 83582 |||||||| | ||||| ||||||| | |||||||||||| |||| |||| || Sbjct 429 TCGTCGCGCACGGACCAGCTGACGATCTGGCCCATGCCCTTCATCTTGTTGAAGCGCGGG 488 Query 83583 AAGGACATCAGCAGGGCGAAGGACGAGAAAAGCTGCATCCCCTCGCCGAAGGCCGAGAAC 83642 ||| |||||||| ||||| || | ||| ||||| | ||||||| ||| | |||| Sbjct 489 AAGTTCATCAGCATCGCGAACGATGCGAACAGCTGAAGCCCCTCGGTAAAGCCGCCGAAC 548 Query 83643 ACGGCGATG---TCGACCATCAGGTCGGCG--ATCGAGTTGCCGCTGTCCCGATTGAACA 83697 | ||||| | | | | || ||| | ||||| |||| | | || | Sbjct 549 ATGGCGAGGGTCTTGGCGATATCCTCGTCATTATCGAC--GCCGAACTGCTGA------A 600 Query 83698 TGTACTCGTGCTTCTCGCGCATCGCCTCGTAGTCGAGGAAGGCGCGGAACTCGACCTCGG 83757 ||| |||||||| || |||| | | || |||||||| || | ||| |||| Sbjct 601 GGTAATCGTGCTTGTCCTTCATCTCGGCATATTCGAGGAACATGCCATATTCGCTTTCGG 660 Query 83758 GCAGGCCCAGGGTGTCGATCAGCGTCGA-GTAGGCGTCGATGTGGTTGGCCTCGGCGGCG 83816 ||| ||| | ||||||| ||| || | |||||| ||||||| | || | | Sbjct 661 GCATGCCGATCGTGTCGAGCAG-GTGGCTGTAGGCCGCGATGTGCACCGTTTCCATGTTG 719 Query 83817 ATGAACGCGCCCAGCATCATCCGCACTTCCGGGTGCGGGAAG-CGCGGGCCGTACTTCTC 83875 ||| ||| | ||||||||| | || | || ||| ||||| ||||| || || Sbjct 720 GAGAAGGCGGCGAGCATCATCTTGATCTCGGTCGGCTTGAACACGCGG-CCGTATTTTTC 778 Query 83876 GAAGTAGCCGCGCGCCACGTCGACGTCGGCCTGGGTGAAGAACCGGAAGAGTTGCGTCAG 83935 | ||||| | ||| ||||| || ||||| |||||||| ||||||| || ||||| Sbjct 779 GTGGTAGCAATCCTGCACCTCGACATCCGCCTGCGTGAAGAAGCGGAAGATCTGGGTCAG 838 Query 83936 CAGG--GACTTCTCGTCCGGCGTCAGCTTCTCGTTCCAGTCCTGGATGTCCTGGTCCATG 83993 ||| | ||| | ||| | ||||| | |||||| || |||| ||| Sbjct 839 CAGATTGCGTTCATGGTCGGTG--AGCTTTTGCGCCCAGTCGCGGCAATCCTCTCCCAGC 896 Query 83994 GGGGCTTCGTGCGGAAGCCAGTGCATGGCCTGCATGGTCTTGTAGGCCTCATAGGCCCAG 84053 || | || | || |||||||| || |||| ||| || ||||||||||||| Sbjct 897 GGCACCTCTTCGGGCAGCCAGTGGATCTGCTGCTGACGCTTCCAGAACTCATAGGCCCAG 956 Query 84054 GGGTAGACGAACGGCTTGTAGTAGTCGCGGGACTTGAGCAGGGACATG 84101 || || |||||||||||||| | ||||| | ||| || | |||| Sbjct 957 GGATATTCGAACGGCTTGTAGGTCTTGCGGGCTTCGAGAAGAGGCATG 1004 >seq8325 Length=1725 Score = 86.0 bits (94), Expect = 9e-12 Identities = 86/108 (80%), Gaps = 3/108 (3%) Strand=Plus/Plus Query 129125 CTTGCCCGGATCGGTGATCGGGTCCTTGTAGATTTCGACCCACTCGCCGTTGATCTCCTG 129184 |||||| | |||||||| ||| |||||||| | ||||||||||| |||| || | | || Sbjct 484 CTTGCCGGCATCGGTGACCGGATCCTTGTATACATCGACCCACTCACCGTCGA-CCCGTG 542 Query 129185 -GGCCGAGGACTTCATCGCCCACTTGTTGGTGTCGCGGTCCAGGTCGC 129231 |||||| |||||| ||| |||| | ||||||||||||| ||||| Sbjct 543 CCGCCGAGCACTTCAGCGCGAACTTCTGCGTGTCGCGGTCCA-GTCGC 589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709406315050720