Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq14750 307 1e-78 seq1923 293 3e-74 seq26881 203 5e-47 seq8325 86.0 9e-12 >seq14750 Length=960 Score = 307 bits (340), Expect = 1e-78 Identities = 454/635 (71%), Gaps = 16/635 (3%) Strand=Plus/Minus Query 136078 CACGCCGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGT 136137 |||||| |||||||||||||| || ||| | | ||||||| | || | | ||| || Sbjct 632 CACGCCCGCGTCCTTGCGGCATTCGACGTGCGCCGTGGCCTCGCGGTGCTGCGACAGCGT 573 Query 136138 GAAGGTCGCCTTGGCCTG----GGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACG 136193 || || || ||| || ||| || || | ||||| |||||||| ||| Sbjct 572 GA---TCTGCT-GGCGTGCGGCGGTACGGCTCAGCACGCGGCCGGCGCCGTGGCTGCAGC 517 Query 136194 AGCAGAACGAGTCCGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGC 136253 | ||| |||||||||||||||||||||||||||| || ||| || ||||| || Sbjct 516 TGTGGAAGCTGTCCGCGTTGCCCTTGCCGCGCACGATGAAGCTCTTCGCGCCCATGCTGC 457 Query 136254 CGGGGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGA 136313 |||| |||||||| | || | | |||| |||||| ||||||||||| || | | Sbjct 456 CGGGAATGATCCCCAGCTCGCCAGCACGCGCGCTCACCGCACCCTTGCGGGTGACCAGCA 397 Query 136314 CCCACTCGTCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCT 136373 | |||| | ||| |||||||| |||||||||||||||||||| ||||| || Sbjct 396 GCTCCTCGCCACCGTGCGTCTCCTTCTGCACGTAGTTGTGGTGGCAGTTGACCGCCATCT 337 Query 136374 TGTCCGTCTTGAACGGCGGCAGGCCCGACGCTCGCATGGCCTCCAGGACCCGGACCATCA 136433 | ||| || |||| ||||||| || | ||||| | |||| || || ||||| Sbjct 336 TTTCCAGCTGGAACTTCGGCAGG--CGGTG-GCGCATCTCGGCCAGCACGCGCGACATCA 280 Query 136434 TCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGT 136493 || ||||||||| || ||| ||||||| |||||| |||||| ||||||||||||| Sbjct 279 TCGCCTCGCGGTTCTCGCGGGCGTAGTCCTGCGCCCAGGAGACGGCCTCCACGTAGTCGT 220 Query 136494 GGAACTCCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGC-GGCTTACGCCCG 136552 |||| ||||||||| || || | || |||||||||||| || || | ||| Sbjct 219 CGAACAGCGGCTCGCCCTCCATGAAGAAGGCCAGGTCCTTGTCCGGCAGGTGGAACCCCA 160 Query 136553 TCACGGCGCAGCATCATCTCCTTG---GCCTTCTCGATGAAGATGCGGCCGATGGTGTTG 136609 ||| ||| || || | || | ||| |||||||||| | |||||| |||| Sbjct 159 GCAC-GCGATGCGCCAATTGCTCGCGAGCCCGCTCGATGAAGTAGGTGCCGATCAGGTTG 101 Query 136610 CCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAG 136669 ||| ||||||||||| ||| ||||||||||||||| | | |||||||||||| Sbjct 100 CCGGTACCGCGCGAGCCGCTGTGCAGCATCACCCAGACGGCATCGCTTTCGTCGAGGCAG 41 Query 136670 ACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCC 136704 | |||||||||||||||||||||||| || ||||| Sbjct 40 AGCTCGATGAAGTGGTTGCCGCCGCCGAGCGTGCC 6 >seq1923 Length=5946 Score = 293 bits (324), Expect = 3e-74 Identities = 643/937 (69%), Gaps = 56/937 (6%) Strand=Plus/Minus Query 136078 CACGCCGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGT 136137 ||||||| |||||||||||| |||||| | ||||||||| | || | |||| || Sbjct 4396 CACGCCGCTGTCCTTGCGGCATTCCACGTGCGCGGTGGCCTCGCGGTGCTGGGCCAGCGT 4337 Query 136138 GAAGGTCGCCTTGGCCTGGGT-CCGCGAC--ATCGTCCGGCCCGCGCCGTGCGAGCACGA 136194 || || || | | || || || | ||| |||||| || ||||| ||| Sbjct 4336 GA---TCTGCTGGCGCGCCGTGCCACGGCTCATCACCCGGCCGGCCCCGTGGCTGCAGCT 4280 Query 136195 GCAGAACGAGTCCGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCC--CCCATCGAG 136252 | ||| ||| ||||||||||||||||||||||||||| || || ||||| | Sbjct 4279 GTGGAAGCTGTCGGCGTTGCCCTTGCCGCGCACGATGTAG--CTGCGCGTGCCCATGCTG 4222 Query 136253 CCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGAC--ACCGCGCCCTTGCGGGTCACGA 136310 ||||| ||||| || | || | ||||| ||| || || || ||||| |||||||| | Sbjct 4221 CCGGGAATGATGCCCAGCTCG-CCTTC-GCGGGCACTGACGGCCCCCTTCCGGGTCACCA 4164 Query 136311 AGACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCT- 136369 | || | || ||| ||||||||| |||||||||||||||||||||||||| Sbjct 4163 GCAGTTCCTGGCCGTGGTGCGTTTCCTTCTGCACGTAGTTGTGGTGGCAGTTCACCGCCA 4104 Query 136370 TCCTTGTCCGTCTTGAACGGCGGCAGGCCCGACGCTCGCATGGCCTCCAGGACCCGGACC 136429 || || | | || |||| ||||| || | || |||| | |||| || || | Sbjct 4103 TCGCTGCCAG-CTGGAACTTCGGCAAGCG-GTGGC--GCATCTCGGCCAGCACGCGCGAC 4048 Query 136430 ATCATCATCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAG 136489 |||||| ||||||||| ||| ||| ||||||| |||| | |||||||| |||||| Sbjct 4047 ATCATCGCCTCGCGGTTCTGCCGGGCGTAGTCCTGCGCCCACGACACGGCTTCGACGTAG 3988 Query 136490 TCGTGGAACTCCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTT-ACG 136548 || | |||| |||||||||||| || | || |||||||||||| || | | | | Sbjct 3987 TCATCGAACAGCGGCTCGCCTTCCATGAAGAACGCCAGGTCCTTGTCCGGCAGGTGGAAG 3928 Query 136549 CCCGTCACGGCGCAGCATCATCTCCTTG---GCCTTCTCGATGAAGATGCGGCCGATGGT 136605 || |||| ||| | || |||| | ||||||||||||||| | |||||| Sbjct 3927 CCGAGCACG-CGCCGGGCCAGTTCCTCGCGCGCCTTCTCGATGAAGTAGGTGCCGATCAG 3869 Query 136606 GTTGCCGACGCCGCGCGAGCCCGAGTGGAGCATCACCCAGAC-GCGCTGGTCCTCGTCGA 136664 ||||||| ||||||||| || ||| ||||||||||| || | | |||| ||||| | Sbjct 3868 GTTGCCGGTGCCGCGCGATCCGCTGTGCAGCATCACCCACACCGTGTCGGTC-TCGTCCA 3810 Query 136665 GGCAGACCTCGATGAAGTGGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGG 136724 |||| | |||||||||||||||||||| ||||| |||||||| ||| || ||| Sbjct 3809 GGCACAGTTCGATGAAGTGGTTGCCGCCACCCAGCGTGCCCAGCTGGCGGTCGAGCTTGT 3750 Query 136725 CGTTCTTCAGCGCCGGGTACTTCTCGCAGAGCTTGTCGAACCGCGCCTCCAGGCCCGAGT 136784 || | ||| | || || | || |||| | ||||||||| | | Sbjct 3749 CGGT--------GCGGATTCT----GCGGTGCCTGTCCTTGATCTTCTCCAGGCCGGCGG 3702 Query 136785 CGACCC---ACTTGCGCAGGATCGAGTTGGGGATGCCGCTGCGC--CCGTTCCAGCCGCC 136839 | | || ||| ||| || | | || |||||| | | || || | | || Sbjct 3701 CCAGCCCGGACT---GCACGAGCCGGGTGTGGATGCTGTCGGGCATGCGGT---GATGCT 3648 Query 136840 CGACGGACCCGGCCC---GCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGC 136896 || || || |||| |||| ||| | | | ||||||| ||| ||| || | Sbjct 3647 CGCCG--CCACGCCCATTGCCGACCGGAATGCTGCGCTCGATGCTGTTGCGCAGC-TGCC 3591 Query 136897 G-AGGCTGTCGGGAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGC 136955 | ||| ||||| ||||| ||| ||| ||||||| || ||| ||||||||||| Sbjct 3590 GCAGGTCATCGGGCAGGTCGTTGGCGCGCAGCGTGGTGCGTACGGCCGCCATGCCGCAGC 3531 Query 136956 CGATGTCGACGCCGACGGCGGCCGGGATGATCGCGCC 136992 |||||||||||||||| ||||||||||||||||| || Sbjct 3530 CGATGTCGACGCCGACTGCGGCCGGGATGATCGCACC 3494 >seq26881 Length=441 Score = 203 bits (224), Expect = 5e-47 Identities = 309/430 (72%), Gaps = 9/430 (2%) Strand=Plus/Minus Query 136339 CTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAACGGCGGCAGGCC 136398 ||| ||||||||||||||||||||||| |||||| | ||||| ||||||| | Sbjct 438 CTGCACGTAGTTGTGGTGGCAGTTCACGGCTTCCACATGCGTCTCGAACGGCTTGGTGAT 379 Query 136399 CGACGCT-CGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCG-CG 136456 | || | |||| || | | || ||| ||||||||| |||||||||| | ||| || Sbjct 378 C-ACTTTGCGCAGCGCGGCGATCACGCGGCCCATCATCACCTCGCGGTTGG-CTGCGGCG 321 Query 136457 AAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGGCTCGCCTTCGCAG 136516 || | ||| |||| | ||||| | |||||||||| || | | || ||||||| | Sbjct 320 AATTTCTGCGCCCACCCCACGGCCTTCACGTAGTCGCCAAAGTACTGCGCGCCTTCCTCG 261 Query 136517 AGCCAAGCAAGGTCCTTGTCCAGCGGCTTACGCCCGTCACGGCGCAGCATCATCTCCTTG 136576 | | || ||||||||||| || | || ||| || | | | || || || |||| Sbjct 260 AAGTACGCCAGGTCCTTGTCGGGCAGGTTGCGCTGGTT-CATCTCGGCGTC--CTTCTTG 204 Query 136577 GCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGAGC 136636 ||| |||||||||| | |||||||| ||| || || || ||||| |||||||| ||| Sbjct 203 GCCAGCTCGATGAAGTGGGTGCCGATGGCGTTCCCCACCCCACGCGATCCCGAGTGCAGC 144 Query 136637 ATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGCCC 136696 |||||||| ||| ||||| ||||| ||||||| ||||||||||||||| || || Sbjct 143 ATCACCCACACGGACTGGTGTTCGTCCAGGCAGATCTCGATGAAGTGGTTACCCGTTCCG 84 Query 136697 AGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCA-GCGCCGGGTACTTCTCGCAGAG 136755 || || ||||| || | |||| | |||||| | ||| ||| | | ||||||| Sbjct 83 AGCGTTCCCAGGTGCTTGTAGTTGTTCGTGTTCTTGATGCG-CGGATGCGCTTCGCAGAT 25 Query 136756 CTTGTCGAAC 136765 || ||||||| Sbjct 24 CTCGTCGAAC 15 >seq8325 Length=1725 Score = 86.0 bits (94), Expect = 9e-12 Identities = 86/108 (80%), Gaps = 3/108 (3%) Strand=Plus/Plus Query 127889 CTTGCCCGGATCGGTGATCGGGTCCTTGTAGATTTCGACCCACTCGCCGTTGATCTCCTG 127948 |||||| | |||||||| ||| |||||||| | ||||||||||| |||| || | | || Sbjct 484 CTTGCCGGCATCGGTGACCGGATCCTTGTATACATCGACCCACTCACCGTCGA-CCCGTG 542 Query 127949 -GGCCGAGGACTTCATCGCCCACTTGTTGGTGTCGCGGTCCAGGTCGC 127995 |||||| |||||| ||| |||| | ||||||||||||| ||||| Sbjct 543 CCGCCGAGCACTTCAGCGCGAACTTCTGCGTGTCGCGGTCCA-GTCGC 589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701051628165440