Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019445.1 Length=44784 Score E Sequences producing significant alignments: (Bits) Value seq27364 221 3e-53 >seq27364 Length=428 Score = 221 bits (244), Expect = 3e-53 Identities = 281/387 (73%), Gaps = 0/387 (0%) Strand=Plus/Plus Query 44398 TCATGCTGCGGATTCAATACAAGCAAAAACTTTCTCACTGGCTGTCACCCTTGCTGGAAC 44457 |||||||||| || || ||||| || ||||| || ||| | || ||| | | Sbjct 1 TCATGCTGCGTATCCAGTACAAACAGAAACTGGCTGCGTGGATCCATGACTATCTGCAGC 60 Query 44458 CGGGTGAAGATGTTTATCAGCTTTCGGGTAACGATCTCGCGCTGCGACTGAATACAGAAT 44517 ||| ||| || |||||||| || || ||||||| | | |||| |||||||| ||| Sbjct 61 CGGATGAGTGCGTGTATCAGCTGTCCGGGCACGATCTGGTGTTGCGGCTGAATACCGAAC 120 Query 44518 CGCACCAGGAGCGCATTACCGCACTGGATAGCCATCTCAAGCAATTTCGTTTCTTTTGGG 44577 ||||||| || ||| || |||||| ||| |||| | ||||| ||| | |||| Sbjct 121 TGCACCAGTCCCGTATTGACGAGCTGGATCTACATATCAAACGTTTTCGCTTCGTCTGGG 180 Query 44578 ATGGCATGCCGATGCAACCGCAGATTGGCGTCAGTTACTGCTATGTGCGCTCGCCAGTGA 44637 |||| |||||| | || |||||| | || ||||| |||||||| ||||| || || ||| Sbjct 181 ATGGGATGCCGCTCCAGCCGCAGGTGGGGGTCAGCTACTGCTACGTGCGTTCCCCGGTGG 240 Query 44638 ATCATATCTACCTGCTGCTGGGAGAGCTAAATACGGTCGCCGAACTTTCCATCGTGACCA 44697 ||| | || ||||||||||| ||||| | || | || || || ||| | | ||||| Sbjct 241 TGCATCTTTATCTGCTGCTGGGGGAGCTGAGCACCATAGCGGATCTCTCCCTGGCGACCA 300 Query 44698 ACGCCCCGGAAAATATGCAGCGTCGCGGGGCAATGTATTTGCAACGCGAATTGAAAGATA 44757 | ||||||||| |||||| || || || || || ||||||||| ||||||| | Sbjct 301 ATCACCCGGAAAACCTGCAGCAGCGGGGCGCCATCAATCTGCAACGCGGCCTGAAAGACA 360 Query 44758 AAGTCGCGATGATGAATCGACTACAGC 44784 ||||||||||||||||||| || |||| Sbjct 361 AAGTCGCGATGATGAATCGCCTGCAGC 387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143126771332428