Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq451 215 1e-50 seq195 183 6e-41 >seq451 Length=16219 Score = 215 bits (238), Expect = 1e-50 Identities = 508/748 (68%), Gaps = 32/748 (4%) Strand=Plus/Plus Query 212909 GTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGG 212968 |||||| ||| || ||||| | ||| || | | | ||| | |||||| ||||| || Sbjct 7933 GTTGACGATCGTAAACTCACCAGCGAGTACGCGACGATTGTACATGTTTGATGTGTACGG 7992 Query 212969 CTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCAC 213028 ||||||| || ||||| ||||| ||||| ||||| || || ||||| |||||||| Sbjct 7993 CTCGATGGATTCATTGTTGCCCAGGATCTGGGCAGTTGAAGCAGTTGGCATAGGAGCCAC 8052 Query 213029 CAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCG--AAGCTCTGCCCAGTCC 213086 || | | ||| | | ||||||| | | | | || ||| | | ||||||| Sbjct 8053 TAGCAAAGAGTTACGAATACCGTGCTTGATCAC-ATTCTCCTTCAAGG-CGGTCCAGTCC 8110 Query 213087 CATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTG 213146 || |||||| | | || ||| |||||||||||| || ||||| || ||| Sbjct 8111 CAAAGACCAGAC--GACGGAGTGA--CACC--CCACATGTCAAATTGGAAGATCCCCTTG 8164 Query 213147 CTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGAC 213206 || | ||| ||||||| | | ||| || || | |||||||| | ||| || Sbjct 8165 CTGGCAGGGGAGCCCTGGAACGTCTCGTACGGACCCAGTTCCTTGGCAATCTCCATAGAA 8224 Query 213207 GCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG-GCCTC 213265 | || || | ||||||||||||||| ||||| || | | |||| || ||| | ||||| Sbjct 8225 GTCTCCATCGAAGCGTAGTAGATGGTCTCAAAGATGTTCTTGTTCAG-TTCACGAGCCTC 8283 Query 213266 TGGGGACGTG--AAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCG 213323 | || | || | | ||||| | | || |||| ||||| || || || || Sbjct 8284 TTC--ACTTTCAAACGCAAAGTTCATGAGAAGAAAAGCATCGGCCAGACCTTGAACACCA 8341 Query 213324 ATGCCGATGGGTCTGTGTCTCAGGTTAGACTTG-GAGCACTCCTCCAAG-GGGTAAAAGT 213381 || || | ||| | || | || ||| || || |||| | || ||| ||||| ||| Sbjct 8342 ATTCCCACGGGACGATGGCGCATGTTGGATTTTCGAGC--TTCTGCAACCGGGTAGTAGT 8399 Query 213382 TGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACT 213441 || ||| |||| |||||||||||||||||| | || ||||| || | | ||| | | Sbjct 8400 TGACGTCAATGACTTTGTTGAGGTTGCGGGTGACGACCTTGGTCACGTCGTACAGCAATT 8459 Query 213442 CGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTG--GCCAG 213499 || |||||||| ||||| | |||||||| ||||| || | ||| |||| Sbjct 8460 TGTAGTTGAACACA------CCGTCTTCCACAAACTTGGGCAGCGCCA--CTGACGCCAA 8511 Query 213500 GTTGCAAACGGCCACCTCCTGAG-AGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGC 213558 |||||| || || ||||| | | || | ||||||||||| | ||| ||||| ||| | Sbjct 8512 GTTGCACACCGCAACCTCGTCCGGAGAC-GTGTACTCCATCACCTCACAGCACAAGTTAC 8570 Query 213559 TGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGA 213618 || ||||||| ||||| || ||||| || || ||||| ||||| | |||||||| | Sbjct 8571 TGGATCGGATCGTGCCAAGATTCTGCTGATTGGACTTACGATTGGCCGCGTCCTTGTAAA 8630 Query 213619 GCATGTAGGGGGACCCGGTCTCTAGCTG 213646 |||| |||| ||| ||||| | ||| Sbjct 8631 GCATAAAGGGCACCCCCGTCTCAATCTG 8658 >seq195 Length=24554 Score = 183 bits (202), Expect = 6e-41 Identities = 551/843 (65%), Gaps = 21/843 (2%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || || || | |||||||||||||| ||||| |||| | ||||| | ||||| Sbjct 23577 GTATTCACCTACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGAAGTGAGATCATGTCCAT 23518 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| || || | | | || |||| | |||||| | Sbjct 23517 CCAGTCGAACGGGTTCTTGACGTGGTAAATCTTAGACACCCCCAATGAGTACAGCAGACG 23458 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 || || ||| |||||||||| | ||||||| || ||||||||| ||||| || Sbjct 23457 GTCAGCCACGAACTCGATGTACTGGCACATGAGCGTTGAGTTCATGCCGATGAGCTCAAC 23398 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | | | | |||||| | ||| || ||| || || | | |||| | Sbjct 23397 AGGGAGGGAGTCACACACAAACTCGTGCTCGATAGCCACCGCGTCACGAATGATCTCGTG 23338 Query 48082 AACGCGGGACTCTGAGG--GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAG 48139 || || ||||| || | || ||| ||| | ||| || | | |||||||||| Sbjct 23337 CACACG--ACTCTCCGGCAGCTTATTGACCAGTT---TGGAGTACATGAGGCAGGCAAAG 23283 Query 48140 TCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATG 48199 || | |||| || || || || ||||| ||| | || || |||| ||||||||||||| Sbjct 23282 TCGGTATGCATACCCTCATCACGACTGATAAGCTCATTCGAAAAGCTGAGACCAGGCATG 23223 Query 48200 ACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCC 48259 | || | | || |||||||| || | ||| ||||||||||||||||| |||||| Sbjct 23222 AGACCACGTTTCTTCAGCCAGAAGATGGAGCAGAAGGAGCCAGAGAAGAAGATACCCTCC 23163 Query 48260 ACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAG-CGTTCTTGTCTGAGATCCAGGA 48318 |||| |||||||| || | |||| || | || | | | | | | | ||| Sbjct 23162 ACTGAGGCGAACGCAAGAAGACGCTCTGCGTATGACGACACACGCGGGTCACA-CCACTT 23104 Query 48319 AAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC---CCGGAAGAG 48375 || ||||| | || |||||||| | || || || || || ||||| | | || || Sbjct 23103 GAGTGCCCAAGCGGCTTTCTTCTTCACACACGGGATAGTGTCAATGGCACGCAGCAAAAG 23044 Query 48376 CTTCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTC 48432 | ||| ||| | |||||| | || || | |||| ||| | || | ||| Sbjct 23043 GTCCTT---CTCTACAGCGTCCTTGATGTACGTGTCAATGAGTAGC---GAATAGACCTC 22990 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | ||||| ||||| ||||| || |||||||| || || || ||||| Sbjct 22989 CGAGTGAATGTTCTCGATAGCAATCTGAAAACCGTAGAAACACCGAGCTTCGGGAACCTG 22930 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 |||||| || ||| || ||| || ||||| || || ||||| || ||||| Sbjct 22929 CACTTCGTTGCTGAAGTTCATGGCCAGGTTTTCATTCACAATGCCATCACTGGCTGCAAA 22870 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTG 48612 |||||| || ||||| || | || || |||||||||| ||||| ||||| | | Sbjct 22869 GAAGGCGAGCACATGCTTGATAAAGTGACGCTCGTTGTCAGTGAGGTTTTTCCAATCTTT 22810 Query 48613 TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTA 48672 | ||| | |||| |||| || || | ||||| || || || ||||| ||||| Sbjct 22809 AATGTCGTGCACCAGATCCAGCTCCTCAGCCGTCCAAAACGAGGCCTCAGCTTTCTTGTA 22750 Query 48673 CAT 48675 ||| Sbjct 22749 CAT 22747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931118978197760