Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq195 154 3e-32 >seq195 Length=24554 Score = 154 bits (170), Expect = 3e-32 Identities = 554/858 (65%), Gaps = 23/858 (3%) Strand=Plus/Plus Query 25471 AAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATT 25530 || ||| | ||| ||||||||||||| ||| | ||| ||||| || || ||| | Sbjct 22732 AATGATGTCTGGCAGATGTACAAGAAAGCTGAGGCCTCGTTTTGGACGGCTGAGGAGCTG 22791 Query 25531 GATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTC 25590 ||||||| | ||||| | | ||| | || | | |||||| || ||| || Sbjct 22792 GATCTGGTGCACGACATTAAAGATTGGAAAAACCTCACTGACAACGAGCGTCACTTTATC 22851 Query 25591 AAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650 ||| | ||| | || |||||||||||| |||||| || ||||| || || ||| | | Sbjct 22852 AAGCATGTGCTCGCCTTCTTTGCAGCCAGTGATGGCATTGTGAATGAAAACCTGGCCATG 22911 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 | |||| || ||||||||| || || ||||||||||||||| ||||| || Sbjct 22912 AACTTCAGCAACGAAGTGCAGGTTCCCGAAGCTCGGTGTTTCTACGGTTTTCAGATTGCT 22971 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGAC 25767 ||||| || | ||||| ||||| ||| | ||| || || |||||||| | ||| Sbjct 22972 ATCGAGAACATTCACTCGGAGGTCTATTC---GCTACTCATTGACACGTACATCAAGGAC 23028 Query 25768 GTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCAC-ATACCCAGCATCAAGAGGAA 25826 | | |||| || | || | ||||||| || ||| || || | | |||| ||| Sbjct 23029 GCTGTAGAGAAGGACCTTTTGCTGCGTGCCATTGA-CACTATCCCGTGTGTGAAGAAGAA 23087 Query 25827 GGCGCGGTGGGCCATGAAGTGG-ATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGG 25885 || ||||| | |||||| | | | || | | | | | | ||||| || Sbjct 23088 AGCCGCTTGGGCACTCAAGTGGTGTGACCCGCGTGTG-TCGTCATACGCAGAGCGTCTTC 23146 Query 25886 TAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGG 25944 | || || || | |||||||| ||||| ||| || || || ||| ||||||||||| Sbjct 23147 TTGCGTTCGCCTCAGTGGAGGGTATCTTCTTCTCTGGCTCCTTCTGC-TCCATCTTCTGG 23205 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 || ||| | | | || | |||||| || || |||||| || ||||| ||||| | || Sbjct 23206 CTGAAG-AAACGTGGTCTCATGCCTGGTCTCAGCTTTTCGAATGAGCTTATCAGTCGTGA 23264 Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACC 26063 |||||| | || | || ||||||||||| | ||| | | | || | || || | Sbjct 23265 TGAGGGTATGCATACCGACTTTGCCTGCCTCATGTACTC---CAAACTGGT-CAATAAGC 23320 Query 26064 TTCTCAAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTC 26122 | | |||| | || || ||||| || || |||| |||||| | |||||| Sbjct 23321 TGCCGGAGAGTCGTGTGCACGAGATCATTCGTGACGCGGTGGCTATCGAGCACGAGTTTG 23380 Query 26123 NNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACA 26182 | ||||||||| | |||||| |||| |||| Sbjct 23381 TGTGTGACTCCCTCCCTGTTGAGCTCATCGGCATGAACTCAACGCTCATGTGCCAGTACA 23440 Query 26183 TTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC 26242 | |||| ||||| |||| |||||||| | |||| | | | | ||| ||| Sbjct 23441 TCGAGTTCGTGGCTGACCGTCTGCTGTACTCATTGGGGGTGTCTAAGATTTAC--CACGT 23498 Query 26243 C--TAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGA 26300 | ||||||||||||| ||||| | || || | | || ||||||||||||||||| Sbjct 23499 CAAGAACCCGTTCGACTGGATGGACATGATCTCACTTCAGGGCAAGACCAACTTCTTTGA 23558 Query 26301 AAAGAGGGTCGGCGACTA 26318 ||| | || || || || Sbjct 23559 GAAGCGTGTAGGTGAATA 23576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928432172308160