Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019514.1 Length=74669 Score E Sequences producing significant alignments: (Bits) Value seq21350 125 3e-24 >seq21350 Length=620 Score = 125 bits (138), Expect = 3e-24 Identities = 180/254 (71%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 17063 GCTGTGCTGCTGCCTCGCAGTGGCCTTGGGCATAAATCTGGCATTGTACTTGGGAACCTG 17122 || ||| | ||||| || ||||| || ||||| ||| || || || || || ||| Sbjct 1 GCGGTGATCCTGCCGCGTTCCGGCCTGGGCCATAAGCATGGTATCGTGCTGGGCAATCTG 60 Query 17123 GTGGGTCTGATTGATTCGGACTATCAGGGTGAGCTGAAGGTTTCCCTGTGGAACCGCAGC 17182 ||||| ||||| ||||| |||||||||||| |||||| ||| ||| | |||||||| || Sbjct 61 GTGGGACTGATCGATTCTGACTATCAGGGTCAGCTGATGGTCTCCGTCTGGAACCGTGGC 120 Query 17183 GCTGAACCATACACTGTCAGCCCTGGTGAGCGTGTTGCCCAAATGGTTATCGTGCCAGTA 17242 || | ||| | ||||| |||||||| ||||| ||||| |||| || || Sbjct 121 CAGGACAGCTTCACCATTCAACCTGGCGAGCGTGTCGCCCAGATGGTATTCGTCCCGGTG 180 Query 17243 GTGCAGGCACAGTTTGAGCTGGTTGATGAATTCACTGCTTCAGAACGTGGAGACGGCGGA 17302 || ||||| | ||| | ||||| || || || || | || ||||| || ||||| Sbjct 181 GTACAGGCTGAATTTAATCTGGTAGAAGACTTTGACGCCACCGATCGTGGCGAAGGCGGC 240 Query 17303 TTTGGCCACACCGG 17316 || ||||| |||| Sbjct 241 TTCGGCCATTCCGG 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238712561252770