Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019521.1 Length=219372 Score E Sequences producing significant alignments: (Bits) Value seq3270 145 1e-29 seq5793 107 3e-18 >seq3270 Length=3926 Score = 145 bits (160), Expect = 1e-29 Identities = 393/597 (66%), Gaps = 11/597 (2%) Strand=Plus/Plus Query 139433 AATAGAAAAGGAATTATTTTAGCAGGTGGGTCTGGGACCCGCTTGCATCCATTGACTATC 139492 |||| |||||| ||||||||||| ||||| || || || || ||| | || | || | Sbjct 1018 AATACAAAAGGTATTATTTTAGCGGGTGGTTCAGGAACGCGATTGTACCCCATCACAAAA 1077 Query 139493 AGTGTTTCGAAACAGTTATTACCTGTATACGATAAACCAATGATTTACTATCCATTGACA 139552 | || |||||||| | | ||| | || ||||| ||||||||||| |||||| | || Sbjct 1078 GGAGTATCGAAACAACTGCTTCCTATTTATGATAAGCCAATGATTTATTATCCACTTTCA 1137 Query 139553 ACTCTTATCGAAGCTGGTATAAACGAAATACTTATAATATCAACACCACAGGATAGAAAT 139612 ||||| ||||||||| || || || ||||| || | ||||| | |||| || Sbjct 1138 GTGCTTATGTTAGCTGGTATTAAAGATATTCTTATTATTACGACACCCGAAGATAAGGAT 1197 Query 139613 TCTTTCGAGAACTTACTAGGTAACGGTTCACAATTTGGTGTTAGAATAGAATACGCTGTT 139672 ||| ||| | | | || || ||||| || ||||| || | |||| || | Sbjct 1198 AGTTTTGAGCGCCTTTTGGGCAATGGTTCGCAGTTTGGGATTCACTTGCAATATGCAATA 1257 Query 139673 CAAGAAAAACCTAATGGTTTAGCACAAGCTTTCGTTATCGGTGAAGAATTCATAGGTAAA 139732 ||| || || |||| ||||| ||||| ||| |||| |||||||| || || || || Sbjct 1258 CAACCAAGTCCAGATGGATTAGCGCAAGCATTCATTATTGGTGAAGAGTTTATTGGAAAT 1317 Query 139733 TCTAAAGTAGCTCTGATTTTAGGTGACAACATTTTCCATGCTTCTA--ATATAGATAGAT 139790 ||| || | | | | ||||| || ||||| ||| || | | || || Sbjct 1318 AGTAATGTTTGTTTAGTACTTGGTGATAATATTTTTTATG-GTCAAGGCTTTACTCCCAT 1376 Query 139791 --TACTTATGGAAGCTAATATGTCTGATAAA---AATACGATATTTGCATATCGTGTAAA 139845 ||| | ||||| | | ||| | || | |||| || | ||||| Sbjct 1377 GCTACGT---CAAGCTGTTGTACGTGAGCGAGGGGCAACAGTGTTTGGTTACCAAGTAAA 1433 Query 139846 TGATCCTCAGAGATATGGTGTAGTTGAATTCGATGAATATGATAACGCTGTTTCGATCGA 139905 |||||| | ||| |||||| ||||| || |||||| || || || || | || Sbjct 1434 AGATCCTGAACGATTTGGTGTTGTTGAGTTTGATGAACGACATCGGGCAGTATCTCTGGA 1493 Query 139906 AGAAAAACCTTTGAATCCTAAATCTAATTACGCAGTACCAGGCTTATATTTCTATAATAA 139965 |||||||| || ||||||||||||| |||||| |||| | ||||| ||| | || Sbjct 1494 GGAAAAACCAAACAAACCTAAATCTAATTTTGCAGTAACAGGTCTGTATTTTTATGACAA 1553 Query 139966 CGATGTTATCGAAGTAGCTAAGACTATCAAACCTTCAGCTCGTGGAGAATACGAAAT 140022 ||||| || || | || || | | |||||||| | ||| || |||| ||||| Sbjct 1554 TGATGTGATTCAAATTGCAAAAAAAGTAAAACCTTCTGATCGGGGGGAATTAGAAAT 1610 >seq5793 Length=2403 Score = 107 bits (118), Expect = 3e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 139829 TTTGCATATCGTGTAAATGATCCTCAGAGATATGGTGTAGTTGAATTCGATGAATATGAT 139888 ||||| |||| || ||||| ||||||||||||| || ||||| || || || Sbjct 1999 TTTGCTTATCACGTTTCAGATCCCGAGAGATATGGTGTTGTAGAATTTGACGATAATTTC 2058 Query 139889 AACGCTGTTTCGATCGAAGAAAAACCTTTGAATCCTAAATCTAATTACGCAGTACCAGGC 139948 || |||||||| || |||||||||||| | | || ||||| || || ||||| || || Sbjct 2059 AAAGCTGTTTCTATTGAAGAAAAACCTGTACAGCCAAAATCGAACTATGCAGTTCCGGGA 2118 Query 139949 TTATATTTCTATAATAACGATGTTATCGAAGTAGCTAAGACTATCAAACCTTCA 140002 || ||||| ||| ||||||| ||| | ||| | ||||| | || | |||||| Sbjct 2119 TTGTATTTTTATGATAACGAAGTTGTAGAAATCGCTAAAAACATTCAGCCTTCA 2172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701550606402080