Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019527.1 Length=43551 Score E Sequences producing significant alignments: (Bits) Value seq956 170 5e-38 >seq956 Length=9855 Score = 170 bits (188), Expect = 5e-38 Identities = 343/501 (68%), Gaps = 27/501 (5%) Strand=Plus/Plus Query 6406 CGCCATCAGTGTTCAGGTGGTGAATGGCGTTATCAAGACGCTCACAGCGAGGCCAGTATT 6465 ||||||| |||||||||||||| || ||||| || || || || |||||||| | Sbjct 5098 CGCCATCGGTGTTCAGGTGGTGGATCGCGTTGTCCAGGCGTTCGGTCTTCGGCCAGTACT 5157 Query 6466 TTGAGCCACGCTTGACGATAGTCTTGCGCGCCATCTCAGACCAATCAGTTTTCCATGGTG 6525 | || ||||||| |||| ||||| ||||||||| |||||| || ||| || Sbjct 5158 TGTAGGCACGCTTCACGACCGTCTTTTTCGCCATCTCGCCCCAATCGGTCAGCCACGGGC 5217 Query 6526 ATGACTTACCTGACTTGAAGCTC--TGGCTTCGCTGCAT-------------GATGGCAT 6570 | ||||| ||| ||| || || || |||| ||| |||||| | Sbjct 5218 AGGACTT--CTG-CTTCGAGATCCATGCCTTCCATGCCGACGAGCGGTCACGGATGGCGT 5274 Query 6571 TGATCTCATCAACGCTCATTTCCTCAGTCAGGTAGTCACCCTGCGCGGTTTTTACAGTGC 6630 ||||||| || || |||| | || ||||||||||| || | ||||| || || Sbjct 5275 TGATCTCCTCCACCGACATTGCGTCGGTCAGGTAGTCGCCGTCGGCGGTCTTCACCACCA 5334 Query 6631 AGTACCCGCCGACAACGGAGCCTCGGTC--TCC-GAAGGCATTGTATTTGTGGGTTGGTG 6687 ||| |||||||||| ||| ||||| || ||| | ||| ||||||| || Sbjct 5335 CGTAGACGCCGACAACCTCGCCACGGTCCTTCGAGAACGGGTTGCGGATGTGGGTCGGCT 5394 Query 6688 CGCTA-TCAAGGCCGTTCGACTCGTAGGTGTCATTGGCGCAAACCAGCTTGCACTGACCC 6746 ||| |||| |||||| || ||||||| || || | ||||||| | ||||||| Sbjct 5395 -GCTGGTCAATGCCGTTGAGGCCGAAGGTGTCGTTCTCGTAGACCAGCTCGGCCTGACCC 5453 Query 6747 CACTGAATAGCCCCAGACACCTGAGCAAGGTGAAGCAAGCCCATGTAGCTGATGTCGAGA 6806 ||| | || | ||| || | || || | | || ||||||||||||||||||||| Sbjct 5454 CACCGGATCGACCCGGAGTCGATCGCCAGATCCATCAGGCCCATGTAGCTGATGTCGAG- 5512 Query 6807 TGCACACCT--CCATCGCGAGGCACCAGGTAGGCAAGCTTGGCCGCCGGGTTCAACGTAA 6864 ||| | || || ||||| |||||||||||||| |||| ||||||||||| | | Sbjct 5513 -GCAGATCTTGCCGTCGCGCGGCACCAGGTAGGCCTGCTTCTTCGCCGGGTTCAGGCTGA 5571 Query 6865 TGCCAATGGCCGCCACGTTGA 6885 |||| ||||| || | ||||| Sbjct 5572 TGCCGATGGCGGCGATGTTGA 5592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139182836476734