Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019541.1 Length=45364 Score E Sequences producing significant alignments: (Bits) Value seq5822 370 3e-98 >seq5822 Length=2392 Score = 370 bits (410), Expect = 3e-98 Identities = 656/957 (69%), Gaps = 12/957 (1%) Strand=Plus/Minus Query 38663 ATGGAACCAGTTTCCACAAGCGGTTTAACAGCAATTTTAAAATTTTATGGAGCGGCAATC 38722 ||| || ||||| | | | || ||| | || ||||||| |||||| | ||||| Sbjct 1652 ATGAAAACAGTTCCAATGAATGGATTAGCCACATTTTTAAATTTTTATAGCATTGCAATT 1593 Query 38723 ATGGTGACTTTAGCGGTCGCTTTAGTTGCAGCAGTAGTATTAATGACACGTATGCCACGC 38782 |||||| ||||||| ||| ||||||| ||||| || ||||||| ||| | || || Sbjct 1592 ATGGTGGCTTTAGCAGTCAGCTTAGTTGTCGCAGTCGTGTTAATGATGCGTTTCCCTCGT 1533 Query 38783 TCACCACAAGAGTGGGCAGTGGGCTTGATCTGTACGGTTGTATCAAGTTTGGCTGGCGGC 38842 ||||| || || ||| || || |||||||||| || || ||||| || | || ||| Sbjct 1532 TCACCGCAGGAATGGATTGTTGGGCTGATCTGTACAGTGGTTTCAAGCTTAACAGGTGGC 1473 Query 38843 TCATTCATTATTGTGAAGTGGGGGCTTCATGAATGGGTTACTGATGTATGGGGGATGATT 38902 ||||| ||||| |||| ||| | || |||||||| ||| | ||||| ||||| Sbjct 1472 TCATTTATTATCATGAAATGGAATTTACAAGAATGGGTCTTGGATATTTGGGGAATGATC 1413 Query 38903 GCTCTAGGTGGGTTCTTCTTTGTTTGTGGATTACCCGGTTGGGCTTTGGTCCGTTGGATT 38962 | || |||| |||||||| |||| || || || ||||||||| | || | ||||| Sbjct 1412 ACACTTTGTGGATTCTTCTTCATTTGCGGTTTGCCTGGTTGGGCTATTGTGAGATGGATA 1353 Query 38963 TTTAACTTCATAGATAAACAGGAAGGTAAAACGATTGTGGAAGTGATCAAAGAGTTTAAG 39022 ||||||||||| ||||||| ||||||||||||||||||||||| || ||||| || || Sbjct 1352 TTTAACTTCATTAATAAACAAGAAGGTAAAACGATTGTGGAAGTTATGAAAGACTTAAAA 1293 Query 39023 AAAGCCAGAAAAGACATTGAAAACAGTTAATGCCGCCTTCGGGCGGTTTTTTATTGCCTA 39082 ||||| | | | || | |||| || ||| | ||| | ||| | Sbjct 1292 AAAGCGAAAGATGATTTGCAAAATAGCTAAAAACAGTTTC------AATCATATGG---- 1243 Query 39083 AAGGAAACCGAAATGAACATTGAAAAATATCTTGATGAATTAATTAAGCGCGAAGGTGGT 39142 | ||| ||||||| || || | || | || | | | || || | |||||||| Sbjct 1242 --GTAAAATAAAATGAATATCGACCAGTACTTAGAAGTAATCATAAACAGAGAAGGTGGG 1185 Query 39143 TACGTAAATAACCCAGCAGACCGTGGTGGTGCAACTAAGTATGGAATTACTGAAGCAGTT 39202 ||||| || | ||| |||||| ||| ||| || || | ||| ||||| |||||||| Sbjct 1184 TACGTTAACCATCCATCAGACCATGGACATGCCACCAAATTTGGCATTACAGAAGCAGTC 1125 Query 39203 GCTCGAGCAAATGGATTCAAAGGTAATATGCGAGATTTACCTCTGGATGTGGCCAAAGCA 39262 |||||| || | || | |||| ||||||| ||||||| | | | |||||| ||| | Sbjct 1124 GCTCGATCACACGGCTATCAAGGCAATATGCAAGATTTAACATTAGCTGTGGCTAAATCT 1065 Query 39263 ATTTATCGCAAAAACTATTGGACAGCCCCACGTTTTGATCAGGTGAATATCATTTCTTCT 39322 |||||| ||| | |||||| | || | ||||| ||| | ||| ||| | Sbjct 1064 ATTTATAAGAAACAATATTGGTTTGAACCCCAATTTGACCAGATCAATGAGATTAGCCCG 1005 Query 39323 GCTGTAGCTGAAGAGCTTCTAGACACTGGTGTGAATTGCGGTACCGGATTTGCAAAACCT 39382 || | || |||||| | | || || || || || || || | ||||||||||| Sbjct 1004 ACTATTGCAGAAGAGTTATTTGATACAGGCGTTAACTGTGGCGTCAATTTTGCAAAACCC 945 Query 39383 CTTTTACAACGTGCTTTGAATCTCCTAAATAACAATGGTAAAGCAGGGTGGCCAGATTTA 39442 | || || |||||||| ||| | || ||||| | || |||| ||| ||| ||||| | Sbjct 944 TTGTTGCAGCGTGCTTTAAATTTGCTGAATAAGCAGGGAAAAGAAGGCTGGTCAGATCTT 885 Query 39443 TCAGTAGATGGGATATATGGTCCGGCAACTCTTAATGCACTCAAAACTTATTTGGTCAAA 39502 | ||||||| ||||| || ||| || | || || | | ||||||| || Sbjct 884 GCTTTAGATGGCCAGTATGGGCCTCTCACTTTTCAAGCTCTTAGAGGTTATTTGAACAGG 825 Query 39503 CGCGGGAAAGAAGGAGAAAAAGTTTTAGTTCGAGTTCTGAATATTATGCAAGGTCAGCGT 39562 || |||||||||||||| || || || || ||| | |||||||||||||| |||| Sbjct 824 CGTCATAAAGAAGGAGAAAAGGTATTGGTACGCGTTTTAAATATTATGCAAGGGCAGCAC 765 Query 39563 TACATTGAAATCTGTGAGCGCAATCCAAGCCAAGAACAATTTTTCTATGGCTGGATT 39619 || || ||||| ||| || |||| | ||| | || || ||||| |||||| Sbjct 764 TATATCGAAATTACAGAGAAGAACCCAAATTATGAAGACTTCTTTTATGGTTGGATT 708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144981988052868