Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq10726 187 8e-43 seq6884 176 1e-39 seq776 170 6e-38 seq23650 154 5e-33 seq10022 123 8e-24 seq2111 123 8e-24 seq29161 93.3 1e-14 >seq10726 Length=1340 Score = 187 bits (206), Expect = 8e-43 Identities = 474/715 (66%), Gaps = 6/715 (1%) Strand=Plus/Plus Query 45521 GTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAA 45580 ||||||||| | ||| ||||||| || | | || || |||||||| || || || || Sbjct 16 GTGTTCGGCTGGCAGATGCGCTTCGACCTCAACGATGGCTTCCCGCTGGTCACCACCAAG 75 Query 45581 AAGTTGCATATCCGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAAT 45640 || |||| | ||||||||||| | || ||||| ||||| | || ||||| || ||| Sbjct 76 AAACTGCACCTGCGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAAT 135 Query 45641 GTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGC 45700 | |||| || |||| || ||| ||| ||||||||||||||||| | |||||| Sbjct 136 ATCGGCTACCTGAAGGACAACCAGGTGCGGATCTGGGACGAGTGGGCCGACGCGAACGGC 195 Query 45701 GATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGTGGAAAGGGGCTGACGGGAAAACG 45760 || |||||||| |||||||| ||| ||||| ||| || ||||| | Sbjct 196 GACCTCGGCCCGGTCTACGGCAAGCAGTGGCGCAGCTGGGCCACCGCCGACGGTCGCGAG 255 Query 45761 GTCGACCAAATTGCGGCGG-TCTTTAAGGAAATCAAGCGCAACCCGAACTCGCGGCGGTT 45819 ||||||| | ||| | || | | | || |||||||||||||| | ||||| ||| | Sbjct 256 ATCGACCAGA-TGCAGTGGCTGGTGGACGAGATCAAGCGCAACCCCGATTCGCGCCGGCT 314 Query 45820 GCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGGGGAAATGAAGTTGCCCCCATGTCATTA 45879 | | || ||||| |||||||||| || | | | ||| | || || || || | Sbjct 315 GGTGGTCAGCGCCTGGAACGTGGGCGAGCTTTCGCAGATGGCGCTGATGCCGTGCCACAA 374 Query 45880 CGCCTTTCAGTTTTACGTCGCGAATGGCCGGTTGTCATGCATGTGGCAACAGCGTTCTGT 45939 | || ||||| ||||| | | | ||| | | ||| | | ||||| | Sbjct 375 CCTGTTCCAGTTCTACGTGGTGGACGGCAAGCTCAGCTGCCAGCTCTACCAGCGCAGCGG 434 Query 45940 CGATACATTTCTAGGATTGCCGTTTAACATCGCTAGCTATGCGCTGTTGACACATATGGT 45999 ||| | || || || ||||||| |||||||| ||||| |||||| |||| || ||||| Sbjct 435 CGACATCTTCCTCGGCGTGCCGTTCAACATCGCCAGCTACGCGCTGCTGACCCACATGGT 494 Query 46000 TGCCCAACAATGCGACCTCGATGTCGGCGAACTCATTTTCACCGGCGGCGACGTCCATTT 46059 || || || ||| | || ||||| || | || || |||| || | Sbjct 495 GGCGCAGGCCACCGGCCTGGGCGTGGGCGACTTCGTGCATACGCTGGGTGACGCGCACCT 554 Query 46060 GTACAAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCC 46119 ||| || ||| | || || || ||||||| |||| || |||||| ||||||| Sbjct 555 GTATTCGAACCATTTCGAGCAGGCCCGCGAGCAGCTGTCGCGTGAACCGCGCGCGCTGCC 614 Query 46120 GAAGCTCGTGATCAAA--CGGAAGCCGCCGTCTATCTTTGACTATGAATACGAGGATTTT 46177 |||||| ||| | || |||| | ||| | | || | || | | ||| || | Sbjct 615 GAAGCT-GTGGTTGAACCCGGAGGTGACCGAC-CTGTTCGGCTTCCAGTTCGACGACATC 672 Query 46178 GAATTTGTCGGCTATGACCCGCACCCGGCGATTAAGGCTCCTGTATCCGTTTGAG 46232 | | |||||| |||||||||||||| || ||||| || || | || |||| Sbjct 673 CGCATCGACGGCTACGACCCGCACCCGGCCATCAAGGCGCCGGTGGCGGTATGAG 727 >seq6884 Length=2068 Score = 176 bits (194), Expect = 1e-39 Identities = 462/697 (66%), Gaps = 16/697 (2%) Strand=Plus/Plus Query 45437 ATGAAACAATATCTAGACTTGCTGCAAGACATCT--TAGAAAACGGCGTGGAGAAAGAAG 45494 ||||| ||||| || || |||||| | ||| | | || | |||| ||||| | Sbjct 1122 ATGAAGCAATACCTCGATCTGCTGC--GCCATGTGCTGGAGCAGGGCGCCGAGAAGTCGG 1179 Query 45495 ATCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGG 45554 | || || || || ||||| ||||||||| | ||| ||||||| || | | | Sbjct 1180 ACCGCACCGGCACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGCTTCGACCTCAACG 1239 Query 45555 ACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGC 45614 | || |||||||| || || || || || |||| | ||||||||||| | || |||| Sbjct 1240 AAGGCTTCCCGCTGGTCACCACCAAGAAACTGCACCTGCGCTCGATCATCCACGAGCTGC 1299 Query 45615 TCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTTGCAGGAGAATGGTGTGACGATTT 45674 | ||||| | || ||||| || || | ||| | |||| || || | || | Sbjct 1300 TGTGGTTCCTGAAGGGCGAAACCAACATCGCCTACCTCAAGGACAACAAGGTCAGCATCT 1359 Query 45675 GGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCGGT 45734 ||||||||||||| || | || ||||| || || || | |||||| ||| ||||| Sbjct 1360 GGGACGAGTGGGCTGACGCGAATGGCGAACTGGGGCCGGTGTACGGCAAGCAGTGGCGCA 1419 Query 45735 CGTGGAAAGGGGCTGACGGGAAAACGGTCGACCAAATTGCGGCGG-TCTTTAAGGAAATC 45793 ||| |||| | ||||| || || ||||||| | ||| | || | | | || ||| Sbjct 1420 GTTGGGAAGGCGTCGACGGAAAGACCATCGACCAGA-TGCAGTGGCTGGTGGACGAGATC 1478 Query 45794 AAGCGCAACCCGAACTCGCGGCGGTTGCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGGG 45853 |||||||||||| ||||||| ||| || | | ||||| |||||||| || || || | Sbjct 1479 AAGCGCAACCCGGACTCGCGCCGGCTGGTGATCAGCGCCTGGAACGTCGCCGAGCTGCCG 1538 Query 45854 GAAATGAAGTTGCCCCCATGTCATTACGC-CTTTCAGTTTTACGTCGCGAATGGCCGGTT 45912 | ||| |||| || || |||| ||| || ||||| ||||| | | ||| | | Sbjct 1539 AAGATGGCGTTGATGCCGTGCCATT-CGCTGTTCCAGTTCTACGTGGTCGACGGCAAGCT 1597 Query 45913 GTCATGCATGTGGCAACAGCGTTCTGTCGATACATTTCTAGGATTGCCGTTTAACATCGC 45972 ||| | | ||||| | ||| | || || || ||||||| |||||||| Sbjct 1598 CAGCTGCCAGCTCTATCAGCGCAGCGGCGACATCTTCCTCGGCGTGCCGTTCAACATCGC 1657 Query 45973 TAGCTATGCGCTGTTGACACATATGGTTGCCCAACAATGCGAC----CTCGATGTCGGCG 46028 ||||| |||||| |||| || ||||| || | | ||||| |||| ||||||| Sbjct 1658 CAGCTACGCGCTGCTGACGCACATGGTGGCGC----AGGCGACGGGTCTCGGCGTCGGCG 1713 Query 46029 AACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGGAACAAGCGAAAC 46088 | || | ||| ||||||| || |||| || || || || ||| Sbjct 1714 ATTTCGTGCACACGCTGGGCGACGCGCACCTGTATTCGAACCACTACGACCAGGCGCGTG 1773 Query 46089 TGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCT 46125 || ||| ||||||| || ||| || |||||||||| Sbjct 1774 AACAACTGGCGCGCGAACCCCGCGCGTTGCCGAAGCT 1810 >seq776 Length=11329 Score = 170 bits (188), Expect = 6e-38 Identities = 473/717 (66%), Gaps = 10/717 (1%) Strand=Plus/Plus Query 45521 GTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAA 45580 |||||||||| ||| ||||||| || || || || || ||||| || || || || Sbjct 10146 GTGTTCGGCCACCAGATGCGCTTCGACCTGTCCGAAGGCTTTCCGCTGGTCACCACCAAG 10205 Query 45581 AAGTTGCATATCCGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAAT 45640 ||| |||| || || ||||| |||||||| ||||| | ||||| | ||| Sbjct 10206 AAGGTGCACCTCAAGTCCATCATCCTGGAACTGCTGTGGTTCCTGCGCGGCGACAGCAAT 10265 Query 45641 GTTCGCTATTTGCAGGAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGC 45700 || |||| |||||||| || || || |||||||| |||||| || ||||| Sbjct 10266 GTGCGCTGGCTGCAGGAGCGCGGCTGCACCATCTGGGACGAATGGGCCCGCGAGGACGGC 10325 Query 45701 GATCTCGGCCCAATCTACGGCGCGCAATGGCGGTCGTGGAAAGGGGCTGACGG-GAAAAC 45759 || || ||||| |||| |||| ||||||||| ||| | | ||||| | || Sbjct 10326 GACCTGGGCCCGGTCTATGGCGTGCAATGGCGCAACTGGCCGACGCCGGACGGCGGCCAC 10385 Query 45760 GGTCGACCAAATTGCGGCGGTCTTTAAGGAAATCAAGCGCAACCCGAACTCGCGGCGGTT 45819 ||||||| || || | || | ||| | ||||| |||||||| || || || | Sbjct 10386 A-TCGACCAGATCGCCGAAGTGGTCAAGCAGCTCAAGAGCAACCCGGACAGCCGCCGCAT 10444 Query 45820 GCTTGTGAGCGCGTGGAACGTGGCAAAGTTGGGGGAAATGAAGTTGCCCCCATGTCATTA 45879 | || ||||| ||||||||||| | || | | ||| | | || || || Sbjct 10445 CATCGTCAGCGCCTGGAACGTGGCCGACCTGCCGCAGATGGCGCTCATGCCCTGCCACGC 10504 Query 45880 CGCCTTTCAGTTTTACGTCGCGAATGGCCGGTTGTCATGCATGTGGCAACAGCGTTCTGT 45939 | ||| ||||| ||||| || | ||| | | ||| | | ||||| | Sbjct 10505 CTTCTTCCAGTTCTACGTGGCCGACGGCAAGCTCAGCTGCCAGCTATACCAGCGCAGCGC 10564 Query 45940 CGATACATTTCTAGGATTGCCGTTTAACATCGCTAGCTATGCGCTGTTGACACATATGGT 45999 || | || || || | || || |||||||| ||||| |||||| |||| || ||| | Sbjct 10565 GGACATCTTCCTGGGCGTTCCCTTCAACATCGCCAGCTACGCGCTGCTGACCCACATGCT 10624 Query 46000 TGCCCAACAATGCGACCTCGATGTCGGCGAACTCATTTTCACCGGCGGCGACGTCCATTT 46059 ||||| ||||||||||| | || ||||| || | | ||||| |||||| ||| | Sbjct 10625 GGCCCAGCAATGCGACCTGCAGGTGGGCGACTTCGTCTGGACCGGTGGCGACTGCCACAT 10684 Query 46060 GTACAAAAATCATCTGGAACAAG--CGAAACTGCAGCTGACGCGCGAGCC--GCGCCCGC 46115 ||||| || || || | | || ||| || |||||| ||||| |||| |||| | Sbjct 10685 CTACAACAACCA-CTTCACCCAGGTCGAGAC-CCAGCTGGCGCGCCAGCCCTTCGCCTAC 10742 Query 46116 TGCCGAAGCTCGTGATCAAACGGAAGCCGCCGTCTATCTTTGACTATGAATACGAGGATT 46175 |||| ||| |||||| || ||| || ||||| | ||| || |||||||| | Sbjct 10743 --CCGACGCTGCAGATCAAGCGCCGGCCCGACTCCATCTTCGGCTACGAGTACGAGGACT 10800 Query 46176 TTGAATTTGTCGGCTATGACCCGCACCCGGCGATTAAGGCTCCTGTATCCGTTTGAG 46232 | || | |||||||| | | ||| | | || ||||| || || |||| |||| Sbjct 10801 TCGAGGTCGTCGGCTACCAGCACCACGAGCCCATCAAGGCCCCCGTGGCCGTCTGAG 10857 >seq23650 Length=538 Score = 154 bits (170), Expect = 5e-33 Identities = 216/298 (72%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 45437 ATGAAACAATATCTAGACTTGCTGCAAGACATCTTAGAAAACGGCGTGGAGAAAGAA-GA 45495 |||||||| ||||| || || ||||| | | | || | ||| | |||||| || Sbjct 316 ATGAAACAGTATCTTGAACTGATGCAAAAAGTGCTCGATGAGGGCACGCC-AAAGAACGA 258 Query 45496 TCGGACGGGAACAGGCACATTGTCGGTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGA 45555 ||| || || || || || | || | || |||| ||| ||||||| ||| ||||||| Sbjct 257 TCGCACCGGCACCGGTACGATCTCCATTTTTGGCCACCAGATGCGCTTCAACCTGCAGGA 198 Query 45556 CGGATTCCCGCTCGTGACGACGAAAAAGTTGCATATCCGCTCGATCATTTATGAACTGCT 45615 || || ||||| || ||||| || | ||| | |||||||||||| |||||||||| Sbjct 197 AGGCTTTCCGCTGGTCACGACCAAGCGCTGCCATTTACGCTCGATCATTCATGAACTGCT 138 Query 45616 CTGGTTTTTAAAAGGCGATACGAATGTTCGCT-ATTTGCAGGAGAATGGTGTGACGATTT 45674 |||||| | | ||||| || || | |||| || ||| |||||| || | |||| Sbjct 137 CTGGTTCCTGCAGGGCGACACCAACAT-CGCTTATCTGCGCGAGAATAACGTCTCCATTT 79 Query 45675 GGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCCAATCTACGGCGCGCAATGGCG 45732 ||||||| ||||| ||||||||||||||||| |||||| | || || ||| ||||| Sbjct 78 GGGACGAATGGGCGGATGAAAACGGCGATCTGGGCCCAGTTTATGGTAAGCAGTGGCG 21 >seq10022 Length=1431 Score = 123 bits (136), Expect = 8e-24 Identities = 194/278 (70%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 45957 TGCCGTTTAACATCGCTAGCTATGCGCTGTTGACACATATGGTTGCCCAACAATGCGACC 46016 ||||||| |||||||| ||||| || ||| | || || ||||| || ||||| ||||||| Sbjct 529 TGCCGTTCAACATCGCCAGCTACGCCCTGCTCACGCACATGGTGGCGCAACAGTGCGACC 470 Query 46017 TCGATGTCGGCGAACTCATTTTCACCGGCGGCGACGTCCATTTGTACAAAAATCATCTGG 46076 | || || ||||| |||| | ||||||||||| ||| | |||| || ||| | Sbjct 469 TGGAAGTGGGCGACTTCATCTGGACCGGCGGCGATTGCCACATCTACAGCAACCATGCCG 410 Query 46077 AACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAGCTCGTGATCAAAC 46136 | || | | ||||||||| |||||| |||| | || || | ||| ||| | Sbjct 409 AGCAGGTGGCGCTGCAGCTGTCGCGCGCGCCGTTCGCGTACCCCACGCTGCGCATCCTGC 350 Query 46137 GGAAGCCGCCGTCTATCTTTGACTATGAATACGAGGATTTTGAATTTGTCGGCTATGACC 46196 | ||||| | || ||||| ||||| | | |||||| || || | ||||| || | Sbjct 349 GCAAGCCCGCTTCCATCTTCGACTACCAGTTCGAGGACTTCGAGGTGCAGGGCTACGAAC 290 Query 46197 CGCACCCGGCGATTAAGGCTCCTGTATCCGTTTGAGAA 46234 |||||||| || ||||| || || | || |||||| Sbjct 289 ACCACCCGGCCATCAAGGCACCGGTGGCGGTATGAGAA 252 >seq2111 Length=5547 Score = 123 bits (136), Expect = 8e-24 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 45532 TCAGCTGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAAAAGTTGCATAT 45591 |||| |||||||| || | || || || || | || || || |||||| |||| | Sbjct 2854 TCAGATGCGCTTTGACCTTTCTGAAGGTTTTCCTATGGTTACTACCAAAAAGCTGCACCT 2913 Query 45592 CCGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAATGTTCGCTATTT 45651 || ||||| || |||||| | |||||| | ||||||||||||||| || ||||||| Sbjct 2914 TAAATCTATCATCTACGAACTGTTGTGGTTTCTGAAAGGCGATACGAATATTGGCTATTT 2973 Query 45652 GCAGGAGAATGGTGTGACGATTTGGGACGAGTGGGCCGATGAAAACGGCGATCTCGGCCC 45711 | || || || || | || |||||||||||||| |||||||| ||||| ||||| || Sbjct 2974 AAATGAAAACGGAGTAAAAATCTGGGACGAGTGGGCAGATGAAAATGGCGAACTCGGTCC 3033 Query 45712 AATCTACGGCGCGCAATGGCG 45732 | || ||| |||||||| Sbjct 3034 GGTTTATGGCCATCAATGGCG 3054 >seq29161 Length=379 Score = 93.3 bits (102), Expect = 1e-14 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 45521 GTGTTCGGCCGTCAGCTGCGCTTTAACTTGCAGGACGGATTCCCGCTCGTGACGACGAAA 45580 ||||||| || ||| ||||||| || || ||||| || || || ||||| || || Sbjct 187 GTGTTCGCCCACCAGATGCGCTTCGACCTGGCCGACGGTTTTCCCCTGGTGACCACCAAG 128 Query 45581 AAGTTGCATATCCGCTCGATCATTTATGAACTGCTCTGGTTTTTAAAAGGCGATACGAAT 45640 |||| || || ||||||||| | || |||| ||||| | | ||||| || || Sbjct 127 AAGTGCCACCTCAAGTCGATCATTCACGAGTTGCTGTGGTTCCTGCAGGGCGACACCAAC 68 Query 45641 GTTCGCTATTTGCAGGAGAATGGTGTGACG-ATTTGGGACGAGTGGGCCGATGAAAACGG 45699 | || || |||| ||||| || ||| || ||||||||||||||||| || ||||| Sbjct 67 ATCAAGTACCTGAAGGACAATGGCGT-ACGCATCTGGGACGAGTGGGCCGACGAGAACGG 9 Query 45700 CGATCTCG 45707 ||| |||| Sbjct 8 CGACCTCG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157683825288846