Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019708.1 Length=37595 Score E Sequences producing significant alignments: (Bits) Value seq1150 170 5e-38 >seq1150 Length=8598 Score = 170 bits (188), Expect = 5e-38 Identities = 314/452 (69%), Gaps = 19/452 (4%) Strand=Plus/Minus Query 3668 TGATGTGATCGGGCAGGACTACTGG---GGTGAAGGCGTAACAGCCAAACGTATCGCCGG 3724 ||| |||||||| | ||||||||| || || ||||| || |||| ||| | |||| Sbjct 2485 TGACGTGATCGGTTACGACTACTGGAGCGGCGAGGGCGTCACCACCAAGCGTGTGGCCGC 2426 Query 3725 TGCGCTTCGGGCGATGA--ATGGCGCCGACGTCACGGTCAATATTAACTCCCCTGGCGGG 3782 ||| || || || || | || |||| || |||||||| | |||||||| ||||| Sbjct 2425 TGCACTACGCACGCTGGGCAAGGGGCCG--GTGACGGTCAACGTCAACTCCCCAGGCGGC 2368 Query 3783 GACATGTTCGAAGGCCTGGCCATCTACAACCTTCTGCGTGAATACGAAGGCCGTGTGACT 3842 ||||||||||| |||||| | ||||||||| |||||||| |||| ||| || || Sbjct 2367 GACATGTTCGAGGGCCTGTCGATCTACAACACCCTGCGTGAGCACGACGGCGAGGTCACG 2308 Query 3843 GTGAAGGTGCTCGGTATTGCCGCCAGCGCCGCCTCGGTCATTGCGATGGCCGGGGATGAA 3902 | |||||||| || | || ||| || || || |||| || ||||| || || Sbjct 2307 ATCAAGGTGCTGGGCCTGGCTGCCTCGGCGGCTTCCATCATCGCCATGGCGGGCGACACC 2248 Query 3903 ATTCAGATCGGCCGTGGTGCCTTCCTGATGATCCACAACTGCTGGGTCTACGCGATGGGT 3962 | ||||||| || | | |||||| |||||||||||| ||||| | ||| Sbjct 2247 GTGCAGATCGCACGGGCGGGCTTCCTCATGATCCACAACGCGTGGGTGGTGGTCGCCGGT 2188 Query 3963 AACCGCCATGACTTTGCG-GAACTGGCACAGTCTCTTGAGCCGTTCGATACCGCT--ATG 4019 || ||| ||| |||| || | | | | || |||||||||| |||||| ||| Sbjct 2187 AATCGCATCGAC-CTGCGCGAGATCTCCGACTGGCTGGAGCCGTTCG--ACCGCTCCATG 2131 Query 4020 GCAGACATCTACGCGGCGCGTTCCGGCCT---TGATATGGCAGCCGTTCAGAAACTGATG 4076 || |||||||||| |||||| |||||| | || | || ||||| | |||||| Sbjct 2130 GCCGACATCTACGTGGCGCGCTCCGGCATGAGCGAGAAGGAAGCCGCCC---GCCTGATG 2074 Query 4077 GACGCCGAGAGTTATATCGGTGGCAGTGACGC 4108 ||||||||| | ||||| ||||| || || Sbjct 2073 GACGCCGAGTCCTGGATCGGCGGCAGCGATGC 2042 Score = 89.7 bits (98), Expect = 1e-13 Identities = 241/364 (66%), Gaps = 11/364 (3%) Strand=Plus/Minus Query 5211 CTGCGCCTCGCAATGCTGCAGGCTCAGCTGGCACGCTTCCCGGCTTCCGGCCACGTCCTG 5270 |||||| |||| |||||||||| |||||||| | | | || ||| ||| ||| Sbjct 780 CTGCGCATCGCCATGCTGCAGGTGCAGCTGGCCGAGTACGCAGCAGATGGCATCGTGCTG 721 Query 5271 CACTTCATCGACTGGGCGAAGATTGAACTCACCAAAGACACGCTGGGCCGCTATATCCTG 5330 | |||||||||||| |||| ||||| ||| || || |||| |||| | | Sbjct 720 AATCCCATCGACTGGGCCGAGATCGAACTGCTCAAGGAAACCACGGGCGGCTACCTGTTC 661 Query 5331 GCGAACCCAGCGGCCCTGACTGGCCCTACCCTTTGGGGCCTGCCGGTGGTAGCAACCGAA 5390 || ||||| | | |||| | || ||| ||||||| |||||||| || ||| Sbjct 660 GCCAACCCCCAAGGCGTGACCAGTCCCGTCCTGTGGGGCCGCCCGGTGGTCGCGACCACG 601 Query 5391 GCCGCAGCATTCCAGGGCAAGTTCCTGACCGGTGCATTCAACGC-TGCGGCACA---GCT 5446 ||| || | ||||| ||||||||||| | ||| ||| || | || ||| Sbjct 600 GCCATCGC---CACCGGCAACTTCCTGACCGGCTCCTTC--CGCATGGGTGCCATGGGCT 546 Query 5447 GTTTGACCGTGAAGACGCCAACGTGGTGATCTCCACTGAGAACGCCGACGACTTTGAGAA 5506 | ||||| |||||||||||| | | | || || || ||| |||| | ||| Sbjct 545 G--GGACCGCGAAGACGCCAACATCGCCGTGAGCAACCAGGACCGTGACAACTTCGTGAA 488 Query 5507 AAACATGATCTCGATTCGCTGTGAAGAGCGTCTGGCCCTGGCGGTGAAACGCCCTGAGGC 5566 |||||| | |||| | ||| |||||||| | ||||| | ||| ||||| || || Sbjct 487 GAACATGGTGACGATCCTCTGCGAAGAGCGCATCGCCCTCACCGTGTTCCGCCCCGAAGC 428 Query 5567 GTTC 5570 |||| Sbjct 427 GTTC 424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120131679947526