Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019710.1 Length=40710 Score E Sequences producing significant alignments: (Bits) Value seq1150 87.8 5e-13 seq956 80.6 7e-11 >seq1150 Length=8598 Score = 87.8 bits (96), Expect = 5e-13 Identities = 190/282 (67%), Gaps = 8/282 (3%) Strand=Plus/Minus Query 4474 CGTGATCTGCTGGCTCAGGGCCGCACTTCCAGTAACGCTCTGGAATATGTGCGTGAAGAG 4533 |||||||||||| ||||||||| |||| || || | || | ||||| ||| | Sbjct 1158 CGTGATCTGCTGTTCTGGGGCCGCACGGCCAGCAATGCCATTGAGTTCGTGCGCGAAACG 1099 Query 4534 GTGTTTACCAATAACGCCGACGTGGTGGCAGAGAAAGCA------CTGAAGCCAGAATCG 4587 | || ||||| ||||| | | ||||| ||||| | | |||||| ||| Sbjct 1098 GGCTTCACCAACAACGCTGCCCCCGTGGCTGAGAATCCGGCCGATCCGAAGCCCGAAAGC 1039 Query 4588 GATATCACCTTC-AGCAAACAAACCGCGAACGTGAAGACCATCGCGCACTGGGTGCAGGC 4646 |||||||| ||| ||| | | |||| |||| |||||||| |||| | | || Sbjct 1038 GATATCACGTTCGAGCCCG-ACAGCGCGGCCGTGCGCACCATCGCCCACTTCATCCGCGC 980 Query 4647 ATCACGTCAGGTGATGGATGATGCGCCAATGCTTCAGTCCTACATTAACAACCGCCTCAT 4706 || ||| | |||| |||| ||| ||| ||| ||||| | || ||| || | Sbjct 979 CTCCAAGCAGATCCTGGAAGATGTGCCGCAGCTGCAGGCCTACGTCGACGGCCGGCTGCT 920 Query 4707 GTACGGCCTGGCACTGAAGGAAGAGGGCCAGCTGCTGAACGG 4748 ||||||||| |||||||||| | ||||||||||||||| Sbjct 919 CTACGGCCTGAAGGTGAAGGAAGAAGCCCAGCTGCTGAACGG 878 >seq956 Length=9855 Score = 80.6 bits (88), Expect = 7e-11 Identities = 122/174 (70%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 27389 AGGTATCGTTAGCATGAACAAGTTTTGCCTGACCCCATGAGATAACACCAGACTCCATTG 27448 |||| ||||| | | || || | ||||||||||| ||| || || || || | Sbjct 5419 AGGTGTCGTTCTCGTAGACCAGCTCGGCCTGACCCCACCGGATCGACCCGGAGTCGATCG 5478 Query 27449 CAATATGGAGCAATCCCATATAGCTGATATCAAGGCAAACCATGCCGTCGCGAGGAACCA 27508 | | || | || ||||| |||||||| || ||||| | | |||||||||| || |||| Sbjct 5479 CCAGATCCATCAGGCCCATGTAGCTGATGTCGAGGCAGATCTTGCCGTCGCGCGGCACCA 5538 Query 27509 GATAAGCCAGTTTGCTGGCAGGGTTTAAGGTGATGCCGATCGCAGCAACATTGA 27562 | || ||| | || | || ||||| | | |||||||||| || || | |||| Sbjct 5539 GGTAGGCCTGCTTCTTCGCCGGGTTCAGGCTGATGCCGATGGCGGCGATGTTGA 5592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130095473196096