Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019721.1 Length=40029 Score E Sequences producing significant alignments: (Bits) Value seq1150 96.9 9e-16 >seq1150 Length=8598 Score = 96.9 bits (106), Expect = 9e-16 Identities = 192/282 (68%), Gaps = 8/282 (3%) Strand=Plus/Minus Query 4381 CGTGACCTGCTGGCGCAGGGCCGCATCTCCAGCAACGCTCTGGAATACGTCCGTGAAGAG 4440 ||||| |||||| |||||||| ||||||| || | || | ||| || ||| | Sbjct 1158 CGTGATCTGCTGTTCTGGGGCCGCACGGCCAGCAATGCCATTGAGTTCGTGCGCGAAACG 1099 Query 4441 GTGTTTACCAATAACGCCGACGTGGTGGCCGAGAAAGCG------CTGAAGCCCGAATCG 4494 | || ||||| ||||| | | ||||| ||||| || | |||||||||| Sbjct 1098 GGCTTCACCAACAACGCTGCCCCCGTGGCTGAGAATCCGGCCGATCCGAAGCCCGAAAGC 1039 Query 4495 GATATCACCTTC-AGTAAGCAAACCGCGAACGTGAAGACGATCGCCCACTGGGTGCAGGC 4553 |||||||| ||| || | | | |||| |||| || |||||||||| | | || Sbjct 1038 GATATCACGTTCGAGCCCG-ACAGCGCGGCCGTGCGCACCATCGCCCACTTCATCCGCGC 980 Query 4554 ATCGCGTCAGGTTATGGACGATGCGCCAATGCTGCAGTCATACGTCAACAACCGCCTCAT 4613 || ||| | |||| |||| ||| ||||||| | |||||| || ||| || | Sbjct 979 CTCCAAGCAGATCCTGGAAGATGTGCCGCAGCTGCAGGCCTACGTCGACGGCCGGCTGCT 920 Query 4614 GTACGGCCTGGCGCTGAAGGAGGAAGGTCAACTGCTGAACGG 4655 ||||||||| | ||||||| |||| || ||||||||||| Sbjct 919 CTACGGCCTGAAGGTGAAGGAAGAAGCCCAGCTGCTGAACGG 878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127917192874338