Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019769.1 Length=38964 Score E Sequences producing significant alignments: (Bits) Value seq1150 87.8 4e-13 seq7306 82.4 2e-11 >seq1150 Length=8598 Score = 87.8 bits (96), Expect = 4e-13 Identities = 190/282 (67%), Gaps = 8/282 (3%) Strand=Plus/Minus Query 4381 CGTGATCTGCTGGCTCAGGGCCGCACTTCCAGTAACGCTCTGGAATATGTGCGTGAAGAG 4440 |||||||||||| ||||||||| |||| || || | || | ||||| ||| | Sbjct 1158 CGTGATCTGCTGTTCTGGGGCCGCACGGCCAGCAATGCCATTGAGTTCGTGCGCGAAACG 1099 Query 4441 GTGTTTACCAATAACGCCGACGTGGTGGCAGAGAAAGCA------CTGAAGCCAGAATCG 4494 | || ||||| ||||| | | ||||| ||||| | | |||||| ||| Sbjct 1098 GGCTTCACCAACAACGCTGCCCCCGTGGCTGAGAATCCGGCCGATCCGAAGCCCGAAAGC 1039 Query 4495 GATATCACCTTC-AGCAAACAAACCGCGAACGTGAAGACCATCGCGCACTGGGTGCAGGC 4553 |||||||| ||| ||| | | |||| |||| |||||||| |||| | | || Sbjct 1038 GATATCACGTTCGAGCCCG-ACAGCGCGGCCGTGCGCACCATCGCCCACTTCATCCGCGC 980 Query 4554 ATCACGTCAGGTGATGGATGATGCGCCAATGCTTCAGTCCTACATTAACAACCGCCTCAT 4613 || ||| | |||| |||| ||| ||| ||| ||||| | || ||| || | Sbjct 979 CTCCAAGCAGATCCTGGAAGATGTGCCGCAGCTGCAGGCCTACGTCGACGGCCGGCTGCT 920 Query 4614 GTACGGCCTGGCACTGAAGGAAGAGGGCCAGCTGCTGAACGG 4655 ||||||||| |||||||||| | ||||||||||||||| Sbjct 919 CTACGGCCTGAAGGTGAAGGAAGAAGCCCAGCTGCTGAACGG 878 >seq7306 Length=1951 Score = 82.4 bits (90), Expect = 2e-11 Identities = 134/188 (71%), Gaps = 9/188 (5%) Strand=Plus/Plus Query 10827 GGCGGCGTTTATGACTCCCCC--TCTCTGAGCGCTTTCAGTAATGGGATCGTCAGAAACC 10884 |||||||| |||| ||| ||| ||||| || ||| | ||| ||| || | ||| Sbjct 1738 GGCGGCGTCTATGCCTCGCCCAGTCTCTCTGCATATTCCGG--TGGCATCTACA-ACACC 1794 Query 10885 CCACCA-TGTTCGCTTTCGCAAAAGGCGGGGCCGGAATCATGGGCGAGGCTGGGCCGGAG 10943 || | | ||||||| ||||| || |||| | || | || ||||| || || ||||| Sbjct 1795 CCGCAACTGTTCGCCTTCGCCAAGGGCGCTGGCGTATTC---GGCGAAGCGGGACCGGAA 1851 Query 10944 GCGATCATGCCGCTTACCCGCGCGCCGGATGGTTCTCTCGGCGTTCGTGCGGTCGGAGGT 11003 |||||||||||||| |||| |||||| ||| |||||| || ||| ||| ||| Sbjct 1852 GCGATCATGCCGCTGCAGCGCGGGCCGGACGGTCGTCTCGGTGTGGCCGCGCACGGCGGT 1911 Query 11004 GGCGGCGG 11011 ||||| || Sbjct 1912 GGCGGTGG 1919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124510631137668