Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_019933.2 Length=43870 Score E Sequences producing significant alignments: (Bits) Value seq1150 100 8e-17 >seq1150 Length=8598 Score = 100 bits (110), Expect = 8e-17 Identities = 350/541 (65%), Gaps = 13/541 (2%) Strand=Plus/Minus Query 6384 CAGCTACAGAGCTTCATCAATGCCCGCCTGCTGCGCGGTTTGGAGGTTGTGGAGGAGAAT 6443 ||||| ||| || | || | | ||| ||||| ||| || |||| ||| || Sbjct 951 CAGCTGCAGGCCTACGTCGACGGCCGGCTGCTCTACGGCCTGAAGGTGAAGGAAGAAGCC 892 Query 6444 CAGCTGCTTAACGGCAATGGTACGGGCCAGAATCTGCTGGGCCTCCTGCCGCAGGCCACG 6503 |||||||| ||||| ||| ||| | || || ||| || | |||||||| Sbjct 891 CAGCTGCTGAACGGATCTGGCGTGGGTCTCAACCTCAACGGCATCAACACCCAGGCCACT 832 Query 6504 GCGTTTGCCGCCCCGA---TCACTGTTGCCAATGCCACGGCTGTGGACCGCCTGCGTCTG 6560 |||| ||| |||| |||| || | | ||| ||| | |||||||||||||| | Sbjct 831 GCGTATGCAAACCCGGGCGTCACGGTGGTCGATGAGACGCCGGTGGACCGCCTGCGCATC 772 Query 6561 GCTCTGTTGCAGGCACAGCTGGCCGAGTTCCCGGCTACCGGTATTGTCCTTAACCCGGCA 6620 || || |||||| ||||||||||||| | | || || || || || || || Sbjct 771 GCCATGCTGCAGGTGCAGCTGGCCGAGTACGCAGCAGATGGCATCGTGCTGAATCCCATC 712 Query 6621 GATTGGGCCGGCATTGAACTCCTGAAGGACACTCAGGGCCGCTACATCCTGGGTAATCCG 6680 || ||||||| || ||||| || ||||| || |||| ||||| | | | || || Sbjct 711 GACTGGGCCGAGATCGAACTGCTCAAGGAAACCACGGGCGGCTACCTGTTCGCCAACCCC 652 Query 6681 CAGGGC---ACCCTGGCCCCAACTCTGTGGGGTCTGCCGGTTGTTGCAACTCAGGCGATG 6737 || ||| ||| | ||| | |||||||| | ||||| || || || ||| || Sbjct 651 CAAGGCGTGACC--AGTCCCGTC-CTGTGGGGCCGCCCGGTGGTCGCGACCACGGCCATC 595 Query 6738 GCTGTGGGCCAGTTCCTGACCGGTGCCTT--TGATGCCGGTGCACAGGTCTTTGATCGCT 6795 || ||| | ||||||||||| |||| ||| ||||| || || || ||| Sbjct 594 GCCACCGGCAACTTCCTGACCGGCTCCTTCCGCATG--GGTGCCATGGGCTGGGACCGCG 537 Query 6796 GGGCCGCCCGCGTTGAGGTTGCCACCGAGAATCAGGATGACTTCATCAAGAACATGGTCA 6855 | |||| | | | || || | || | | || ||||| | ||||||||||| | Sbjct 536 AAGACGCCAACATCGCCGTGAGCAACCAGGACCGTGACAACTTCGTGAAGAACATGGTGA 477 Query 6856 CCATCCTGGCCGAAGAGCGCTTGGCTCTGGCGGTCTATCGTCCGGAGTCCTTCATCAAGG 6915 | ||||| |||||||||| | || || | || | || || || | ||| | |||| Sbjct 476 CGATCCTCTGCGAAGAGCGCATCGCCCTCACCGTGTTCCGCCCCGAAGCGTTCGTGAAGG 417 Query 6916 G 6916 | Sbjct 416 G 416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140203205672976